Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0289 ATGCCGCATCAGAAGCCCATTTTGCGAAGCTCTTTGCTTTTCTTACTTTTACAGGTCTTAATCAAAGTAGCTCTCGTGAGCTCCAAATCTACAATCGAGCCTTGCTCAAACTCCGACTCCTGCAATGCCCTCCTCGGCTACACTGTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCCATTGCTATTCTCACCGCCAATGCCATCGACATTTCGTACCCTGACGTAGAGCACCACATTCTTCCCTCCCAACTCTTCCTTAAAATCCCCATTAACTGTTCGTGCGTTGACGGGATTCGTAAATCAGTGTCAACCCATTACAGAACACGGCCCTCTGATACTCTTTCATCGATTGCAGACTCTATATATGGTGGTCTGGTGTCTGCTGCCCAGCTCAGGGAGGCGAACTCCATAACCGACCCGTCAGTATTGGATGTGGGTCAGAGCCTTGTGGTGCCCCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCGTACGTGGTGCAGCCCATCGACACTTTGGCTGCGATTGCTGCCAGGTATTCCACCACCCTTACTGATTTGATGGATGCTAACGCCTTGGGGGGTACGGCTATCAGCGATGGCGATATTCTTGCTATTCCTATCCCGGCTTGCGCATCAAATTTTCCAAATTATTCCGCTGATTATGGTTTGCTCGTCCCCAGTGGAAGTTATGCGATTACAGCGAGCCACTGTATGCAGTGTAGTTGTGGACCACAAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCCTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACAGCACAACAAAGTAGTGCTGGCTGCAATGTTACTTCTTGTAGTTATGATGGTTTTGTTAATGGCACAATAGTAACAACGTTGTCCACTTCTCTTCAGCCTCGATGCCCAGGGCCGCAGAAATTTCCCCGACTGGTAGCGCCGCCTACGACTGTTACCAGGATTGCAGAATTTGCACCATCACCATCGCCTCTGTCACATTCAGGTGGTCCAATGAACCCCAAATCATCGGTGGTGCCTTCGACCGGGTCACTTCCCGGATTCACCCCTGCAAATGGGCCTGCTAGTGGCCTGTCGTCTGGTGCTTCTGCTGCAAGCTCCTTGATGAATCCTATACCCACTTTGACATCTGCGCTTGTGTTACTGTTTGTCAAGTTGTTGATCTCTGTAGCATAG 1266 0.4897 MPHQKPILRSSLLFLLLQVLIKVALVSSKSTIEPCSNSDSCNALLGYTVYTDLKVSEVASLFQIDPIAILTANAIDISYPDVEHHILPSQLFLKIPINCSCVDGIRKSVSTHYRTRPSDTLSSIADSIYGGLVSAAQLREANSITDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYSTTLTDLMDANALGGTAISDGDILAIPIPACASNFPNYSADYGLLVPSGSYAITASHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCSYDGFVNGTIVTTLSTSLQPRCPGPQKFPRLVAPPTTVTRIAEFAPSPSPLSHSGGPMNPKSSVVPSTGSLPGFTPANGPASGLSSGASAASSLMNPIPTLTSALVLLFVKLLISVA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0289 421 MobiDBLite consensus disorder prediction 349 382 - -
Lele26g0289 421 Gene3D LysM domain 169 229 IPR036779 -
Lele26g0289 421 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Lele26g0289 421 SUPERFAMILY LysM domain 111 160 IPR036779 -
Lele26g0289 421 MobiDBLite consensus disorder prediction 356 382 - -
Lele26g0289 421 Pfam LysM domain 179 221 IPR018392 -
Lele26g0289 421 Pfam LysM domain 113 159 IPR018392 -
Lele26g0289 421 SMART LysM_2 112 159 IPR018392 -
Lele26g0289 421 SMART LysM_2 178 221 IPR018392 -
Lele26g0289 421 Gene3D LysM domain 105 168 IPR036779 -
Lele26g0289 421 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Lele26g0289 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 330 - -
Lele26g0289 421 CDD LysM 111 158 IPR018392 -
Lele26g0289 421 CDD LysM 178 220 IPR018392 -
Lele26g0289 421 SUPERFAMILY LysM domain 177 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0289 Lele-ChrLele26 1714129 1716647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0289 4 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 64.524 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0289 26 1714129 1716647 Lele27g1809 27 23072975 23078233 hybridization
Lele26g0289 26 1714129 1716647 Lele28g0294 28 1740437 1742955 hybridization