Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0279 ATGACGCATCAGAAGCCCATTTTGCGTAGCTCTTTCCTTTTCTTACTTTTTCAGGTCTTAATCAAAGTAGCTCACGTGAGCTCCAAATCTACAATCGAGCCTTGCGCAAACTCCGACTCATGTAATGCCCTTCTCGGCTACACTGTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCCATTGCTCTTCTCACCGCCAATGCCATTGACATTTCGTACCCTGACGTAGAGCACCACATTCTTCCCTCCCAACTCTTCCTTAAAATCCCCATTAACTGTTCGTGCGTTGATGGAATTCGTAAATCGGTGTCGACGCATTACAGAACTCGGACCTCTGATACTCTTTCATCGATTGCAGACTCTATATATGGCGGTCTGGTGTCTGCTGACCAGCTCAGGGAGGCGAACTCCATAACCGACCCTTCCGTACTGGATGTGGGTCAGAGCCTTGTGGTGCCTCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCTTACGTGGTGCAGCCCATTGACACTTTGGCTGCGATTGCTGCCAGGTATTCCACCACTCTTACTGATTTGATGGATGTTAACGCCTTGGGGGGTACGGCTATCAGCGATGGCGATATTCTTGCTATTCCTATCCCGGCTTGCGCATCAGATTTTCCAAACGATTCCACTGATTATGGTTTGCTCGTCCCCAGTGGAAGTTATGCGGTTACAGCGGGCCACTGTATGCAGTGTAGTTGCGGACCACAAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACAGCGCAACAAAGTAGTGCTGGCTGCAATGTTACTTCTTGTATTTATGATGGTTTTGTTAATGGCACAATAGTAACAACGTTGTCCACTTCTCTTCAGCCTCGATGTCCAGGGCCGCAGAAATTTCCCCCACTGGTAGCGCCGCCTACTACTGTTACCAGGATTGCAGAATTTGCACCATCACCATCACCTCTGGCACATTCAGGTGGTCCAATGAACCCCAAATCATCAGTGGTGCCTTCGACCGGGTCACTTCCTGGATTCACCCCTGCAAATGGGCCGGCCAGTGGCCTGTTGTCTGGGGCTTCTGCCGCAGACTCTTTGATGAATCCTATACCCGCTTTGACATCTGCGCTTGTGTTATTGTTGGTCGAGTTGTTGATCTCTGTAGCATATTAA 1269 0.4846 MTHQKPILRSSFLFLLFQVLIKVAHVSSKSTIEPCANSDSCNALLGYTVYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSQLFLKIPINCSCVDGIRKSVSTHYRTRTSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYSTTLTDLMDVNALGGTAISDGDILAIPIPACASDFPNDSTDYGLLVPSGSYAVTAGHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCIYDGFVNGTIVTTLSTSLQPRCPGPQKFPPLVAPPTTVTRIAEFAPSPSPLAHSGGPMNPKSSVVPSTGSLPGFTPANGPASGLLSGASAADSLMNPIPALTSALVLLLVELLISVAY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0279 422 Gene3D LysM domain 167 232 IPR036779 -
Lele25g0279 422 Gene3D LysM domain 105 166 IPR036779 -
Lele25g0279 422 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 330 - -
Lele25g0279 422 MobiDBLite consensus disorder prediction 353 376 - -
Lele25g0279 422 SUPERFAMILY LysM domain 177 222 IPR036779 -
Lele25g0279 422 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Lele25g0279 422 SMART LysM_2 178 221 IPR018392 -
Lele25g0279 422 SMART LysM_2 112 159 IPR018392 -
Lele25g0279 422 CDD LysM 178 220 IPR018392 -
Lele25g0279 422 CDD LysM 111 158 IPR018392 -
Lele25g0279 422 Pfam LysM domain 113 159 IPR018392 -
Lele25g0279 422 Pfam LysM domain 179 221 IPR018392 -
Lele25g0279 422 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Lele25g0279 422 SUPERFAMILY LysM domain 111 160 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0279 Lele-ChrLele25 1664954 1667463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0279 4 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 64.858 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0279 25 1664954 1667463 Lele27g1809 27 23072975 23078233 hybridization
Lele25g0279 25 1664954 1667463 Lele28g0294 28 1740437 1742955 hybridization