Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1818 ATGCATGAAAGCAAAGGTCCTGCAATTAAGCTCTTCGGAAAGAAGATTCCATTGCAGGGTGAAGGTGAGGATCCTGCCATTGACGTCGTCGAGAAAGGAGGAGGAGACGACGGGGGACAGAAAAAACGACGAGAGGATGATGCAGCAGACAAGGATTCTCAAATTGGAAAAGTCACAGAGAGCTCTGAAGAGAAAGAGGCTGAACAACTTCCAGAGGCAAGCGTGAACCCGGAAACACCTTTGATGGAGGAAGAAACTTCAAAATCTTCAAAGAACGACGATGGAACCAACTCGCAGGAGAAAATCCTGAAGAAGCCAGATCAATTTCTTCCATGTCCTCGCTGCAACAGCATGAACACAAAGTTCTGTTACTACAATAACTACAACATCAATCAGCCTCGCCATTTCTGCAAATCCTGTCAAAGATACTGGACAGCTGGTGGCACCATGAGGAACGTTCCAGTAGGTGCAGGACGACGAAAGACCAAGAACAGCTCCTCTCATTATCGCTTCGTCACCATTAATGAAGCTCTTCGAGTAGCCAGAATTAGTTCTACTAATGGAACTAATGAAAAAGTTCTCAGCTTTGGGTCAGATCCACCCATGGGTTCTGTCCTGAATCTTGCAGGGAATAAAGTTATTTCTAAAAGCACCCAAAATGGGTTCCATAATCAAATCTCATGTCTTCCTGGTGTTCCCTGGCCTGTCCCTCCAGGTTTTTCTGCCCTGTCATCCAATCATCCTGCAGCTTTTTGGAACGCGAATCCTCCTAGGGTTTCCACGAACTCGTGTTCACCAACCTTAATTTCGTCGAGCTGTGGTCCGAATTCTCGGATATTGGGAAAGCACACGAGGGATGGGGACATGCTTGAGGCAGGGTGTCTGCTGAAAGAAGAACAGTCGAAACAGAGGAAAATCTCTGTTTTGGTGCCTAAAACTTTGAGAATTGATGACCCAATTGAGGCTACCAAGAGTTCAATATGGGCATCCTTAGGAATAAAGAAGGAATTATTGAATGGTGGAAGCATGTTGGAGTGGTTTCGATGGAGGAAAGATAGGAAGAATCCGAGACATGTCGGAGTTGAAACCTCTTCGGTGTTAAGGGCCAACCCAGCGGCCTTGTCTAGATCCGTTTACTTTCATGAGAACTCGTGA 1155 0.4606 MHESKGPAIKLFGKKIPLQGEGEDPAIDVVEKGGGDDGGQKKRREDDAADKDSQIGKVTESSEEKEAEQLPEASVNPETPLMEEETSKSSKNDDGTNSQEKILKKPDQFLPCPRCNSMNTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKTKNSSSHYRFVTINEALRVARISSTNGTNEKVLSFGSDPPMGSVLNLAGNKVISKSTQNGFHNQISCLPGVPWPVPPGFSALSSNHPAAFWNANPPRVSTNSCSPTLISSSCGPNSRILGKHTRDGDMLEAGCLLKEEQSKQRKISVLVPKTLRIDDPIEATKSSIWASLGIKKELLNGGSMLEWFRWRKDRKNPRHVGVETSSVLRANPAALSRSVYFHENS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1818 384 MobiDBLite consensus disorder prediction 1 109 - -
Lele24g1818 384 Pfam Dof domain, zinc finger 108 164 IPR003851 GO:0003677|GO:0006355
Lele24g1818 384 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Lele24g1818 384 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Lele24g1818 384 PANTHER CYCLIC DOF FACTOR 2 3 384 IPR045174 GO:0003700|GO:0006355
Lele24g1818 384 MobiDBLite consensus disorder prediction 84 101 - -
Lele24g1818 384 MobiDBLite consensus disorder prediction 25 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1818 Lele-ChrLele24 23208185 23209727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1818 1 382 C2C2-Dof Transcription Factor Family AT3G47500 39.216 4.56e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele24g1818 zf-Dof 5.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1818 24 23208185 23209727 Lele24g1818 24 23208185 23209727 ECH
Lele21g1903 21 26299406 26301026 Lele24g1818 24 23208185 23209727 hybridization
Lele22g1870 22 23598091 23601437 Lele24g1818 24 23208185 23209727 hybridization