Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1870 ATGACACGTGTACCCTACCTGAGAGCTGCTGATTCAAATACCCTCAGATGTCCGACACGTGAGAAACACATGTTCACGTCACTATCTTCATTTAAATTCGTGTTTCCTGTAAATCAACTACTATTTCCCGGCAAGGATCATTTAATGCAATATGATGTAATAAATGGTGAGAATTTAGACAAGGGTGATGGCGAGGATCCTGCCATTGACGTCGTCGAGAAAGGAGGGGGAGACGACGGAGGACAGAAAAAACGACAAGAGGATGATGAAGCAGACAAGGAATCTCAAATTGGAAAAGTCACAGAGAGCTCTGAAGAGCAAGAGGCTGAACAACTTCCAGAGGCAAGCGGGAACCCGGAAACACCTTCGATGGAGGAAGAAACTTCAAAATCTTCAAAGAACGACGATGGAACCAACTCGCAGGAGAAAATCCTGAAGAAGCCAGAACAAGTTCTTCCATGTCCTCGCTGCAACAGCATGAACACAAAGTTCTGTTACTACAATAACTACAACATCAATCAGCCTCGCCATTTCTGCAAATCCTGTCAAAGATACTGGACAGCTGGTGGCACCATGAGGAACGTTCCAGTAGGTGCAGGACGACGAAAGACCAAGAACAGCTCCTCTCATTATCGCTTCGTCACCATTAATGAAGCTCTTCGAGTCGCCAGAATTAGTGCTACTGATGGAACTAATGGAAAAGTTCTCAGCTTTGAGTCAGATCCATCCATGGGTTCTGTCCTGAATCTTCCAGAGAACAAAGTTGTTTCTAAAAGAACCCGAAATGGGTTCCATAATCAAATCTCATGTCTTCCTGGTGTTCCCTGGCCTGTCCCTTCAGGTTTTTCTCCTCTGTCATCCAATCATCCTACAGCTTTTTGGAACGCGAATCCTCCTAGGGTTTCCATGAAATCGTGTTCACCAACCTTAAATTCATCGAGCTGTGGTCCGAATACTCGGATATTGGGAAAGCACACGAGGGATGGGGACATGCTTGAGGCAGGTTATCTGCAGAAAGAAGAACAGTCGAAACAGAGGAATAGCTCTGTTTTGGTTCCTAAAACTTTGAGAATTGATGACCCAATCGAGGCTTCAAAGAGTTCAATATGGGCAACCTTAGGAATAAAGAAGGAATCATTGAATGGTGGAAGCATGTTGGAGGCGTTTCGATGGAGGAAAGATGGGAAGAATCAGAGACATGTCGGAGTTGAAACCTCTTCGGTGTTAAGGGCCAACCCAGCGGCCTTGTCTAGATCCGTTTACTTTCATGAGAACTCGTGA 1281 0.452 MTRVPYLRAADSNTLRCPTREKHMFTSLSSFKFVFPVNQLLFPGKDHLMQYDVINGENLDKGDGEDPAIDVVEKGGGDDGGQKKRQEDDEADKESQIGKVTESSEEQEAEQLPEASGNPETPSMEEETSKSSKNDDGTNSQEKILKKPEQVLPCPRCNSMNTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKTKNSSSHYRFVTINEALRVARISATDGTNGKVLSFESDPSMGSVLNLPENKVVSKRTRNGFHNQISCLPGVPWPVPSGFSPLSSNHPTAFWNANPPRVSMKSCSPTLNSSSCGPNTRILGKHTRDGDMLEAGYLQKEEQSKQRNSSVLVPKTLRIDDPIEASKSSIWATLGIKKESLNGGSMLEAFRWRKDGKNQRHVGVETSSVLRANPAALSRSVYFHENS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1870 426 ProSiteProfiles Zinc finger Dof-type profile. 152 206 IPR003851 GO:0003677|GO:0006355
Lele22g1870 426 MobiDBLite consensus disorder prediction 126 143 - -
Lele22g1870 426 Pfam Dof domain, zinc finger 150 206 IPR003851 GO:0003677|GO:0006355
Lele22g1870 426 MobiDBLite consensus disorder prediction 57 147 - -
Lele22g1870 426 PANTHER CYCLIC DOF FACTOR 2 83 426 IPR045174 GO:0003700|GO:0006355
Lele22g1870 426 ProSitePatterns Zinc finger Dof-type signature. 154 190 IPR003851 GO:0003677|GO:0006355
Lele22g1870 426 MobiDBLite consensus disorder prediction 110 125 - -
Lele22g1870 426 MobiDBLite consensus disorder prediction 58 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1870 Lele-ChrLele22 23598091 23601437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1870 125 424 C2C2-Dof Transcription Factor Family AT5G62430 48.875 2.64e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele22g1870 zf-Dof 4.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1903 21 26299406 26301026 Lele22g1870 22 23598091 23601437 ECH
Lele22g1870 22 23598091 23601437 Lele22g1870 22 23598091 23601437 ECH
Lele22g1870 22 23598091 23601437 Lele24g1818 24 23208185 23209727 hybridization