Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1903 ATGCAGGAAAACAAAGACCGTGCAATTAAGCTCTTCGGAAAGAAGATTCCATTGCAGGGCGAAGGCCAGGATCCTGCCATTTCCGACGATTCTGCCATTGACGTCGAGCAAGGAGGAGGAGACGATGGAGGACAGAAAAAACTACAAGAGAAGGATGAAGCAGACAAGGAATCTCAAATTGGAAAAGTCACGAAGAGCCCTGAAGAGAAAGAGGCTGATGAACAATTTCCACAGACAAGCGTGAACCCGGAAGCACCATTGATGGAGGAAGGAACTGCAAAATCTTCAAAGAATGACGATGGAACTAACTCGCAGGAGAAAAGCCTGAAGAACCCAGATCAAGTGCTTCCATGTCCTCGCTGCGACAGCATGAAGACAAAGTTCTGTTACTACAATAACTATAACATCAAACAGCCTCGCCATTTCTGCAAATCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAACGTCCCAGTAGGTGCAGGAAGACGAAAGACCAAGAACAACTCCTCTCGTTATCGCTTCGTCACCATTAATGATGCTCTTCGAGTAGCCAGAATTAGTGCTCCCAACGAAACGAATGGAAAAGTTCTCAGCTTTGGATCAGATCCACCCATTGGTTCTGTCCAGAATCTTGCAGATAACAAAATTGTTTCTGAAAGTATTCGAAATGGGTTCCATAATCAAATCTCATATCTTCCTGGTATTTCCTGGCCTGTCCCTTCAGGTTTTCCTTCCCTGTCATCCAAGCATCCTGCAGCTTTTTGGAACGCCAATATTCCTAGGTTTTCCACGAACTCGTCTTCACCAACCTTAAAGTGGTTGAGCTGTGGTCCGAATTTTCGGGTATTGGGAAAGCACACGAGGGATGGGGACATGCCGGAGAAAGAAGAACAGAGGAAACAGAGGGATGGCTCTGTTTTGGTGTCTAAAACTTTGAGGATTGATGACCCAAGTGAGGCTGCAAAGAGTTCGATATGGACAACCTTAGGAATGAAGAAGGAATCATTGAATGGTGGAAGCATGTTTGAGGCGTTTCAATGGAGGAAAGATGGGAAGAATCAGAAACATGTCGGAGTAGAAACGTCTTCGGTGTTAACGGCCAACCCAGCAGCCTTGTCTAGATCCGTTTACTTTCATGAGAACACGTGA 1158 0.4585 MQENKDRAIKLFGKKIPLQGEGQDPAISDDSAIDVEQGGGDDGGQKKLQEKDEADKESQIGKVTKSPEEKEADEQFPQTSVNPEAPLMEEGTAKSSKNDDGTNSQEKSLKNPDQVLPCPRCDSMKTKFCYYNNYNIKQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKTKNNSSRYRFVTINDALRVARISAPNETNGKVLSFGSDPPIGSVQNLADNKIVSESIRNGFHNQISYLPGISWPVPSGFPSLSSKHPAAFWNANIPRFSTNSSSPTLKWLSCGPNFRVLGKHTRDGDMPEKEEQRKQRDGSVLVSKTLRIDDPSEAAKSSIWTTLGMKKESLNGGSMFEAFQWRKDGKNQKHVGVETSSVLTANPAALSRSVYFHENT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1903 385 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Lele21g1903 385 MobiDBLite consensus disorder prediction 40 75 - -
Lele21g1903 385 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Lele21g1903 385 PANTHER CYCLIC DOF FACTOR 2 1 385 IPR045174 GO:0003700|GO:0006355
Lele21g1903 385 Pfam Dof domain, zinc finger 113 170 IPR003851 GO:0003677|GO:0006355
Lele21g1903 385 MobiDBLite consensus disorder prediction 1 116 - -
Lele21g1903 385 MobiDBLite consensus disorder prediction 287 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1903 Lele-ChrLele21 26299406 26301026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1903 1 383 C2C2-Dof Transcription Factor Family AT3G47500 38.661 2.54e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele21g1903 zf-Dof 1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1903 21 26299406 26301026 Lele22g1870 22 23598091 23601437 ECH
Lele21g1903 21 26299406 26301026 Lele21g1903 21 26299406 26301026 ECH
Lele21g1903 21 26299406 26301026 Lele24g1818 24 23208185 23209727 hybridization