Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0618 ATGCAGGAATCTAGAGACCCTGCGATTAAACTCTTCGGCCAGAAGATTCCTCTTCCCGGTGACGGCGAGCTTCCTGCCTTCGCCGTCGCCGACGTTGAAGAATCTGAATCGCTAGGGTCCATGGAGGTGGACACGCAAGAAGGAGGAGACGGTGATGATGGAGAACAACAGAATTCAGATGAGGAGAAGGACGAAGATGACGAGGATCATTCAGCTGGAAACACTGCAGACAAAAAGAAAGAGGCTGAGGATAATCCAAACTCAGAAGAGACTAAGAGTCCAGACTCATCATTGGGTGAGGCTAGTGTGAACCCGAAAACACCTGCCATAGATGAAGAGACTGCAAAATCAAAAAGTGACAACTCAGAGAAGGAGAAAAATGATGCAGCCAACGCTCAGGAGAAAACCCTGAAGAAGCCAGATAAAATACTTCCATGTCCTCGCTGCAACAGCATGGACACCAAATTCTGTTATTACAACAACTACAACATCAATCAGCCTCGTTATTTCTGCAAAGCCTGCCAAAGATATTGGACTGCAGGTGGTACCATGAGGAATGTACCAGTAGGAGCAGGCCGGCGAAAGAATAAGAACTCTTCTTCCCATTATCGCCACATCAGCATCACCGAGGCTCTACAAGCAGCTAGAATTGATGCACCAAATGGGACTCATCTTCCTGCGTTGAAGGGAAATGGCAGAGTCCTGAGTTTTGGACTAAATGCACCTCTTTGTGATTCTATGGCATCTGTCCTGAATCTTGCAGAGAAAAAGGTCCTAAATGGTGTGCGAAATGGATTTCATAGCAAAGGTGCTGAAACTGGTGGCGATGACTGCTCAAGTGCATCTTCCATTACAGTTTCAAATTCTATGGAAGAAAGTGGCAAGAATGTTCCCCAAGAATCATTGCTCAGAACTAACGGTTTTTCTCCTCCTATCCCATGTCTTCCTGGGGTTCCCTGGCCTTATCCTTGGAATGCTCCAGTTCCTTCACATCCTTTATGCCCTCCTGGATTTCCCTTGTCATTCTATCCTGCAGCCTTTTGGAACTGTGGTGTGCCAGGAAATTGGAATATGCCCTGGTTTCCCCCACACCCCTCTGCTCAACAAAACCACCCAATATCTCCTACCACTACCAGTAGTCCTAATTCTCCAACATTAGGGAAGCATTCGAGGGACGGTGATGTGATCAGAACAGACAACTCACAGAAACAAGAAACATCAAAACCGAGAAATGGGCGTGTTTTGGTTCCTAAAACCTTGAGAATTGATGATCCAAGTGAAGCCGCAAAGAGTTCCATATGGGCAACTCTAGGAATCAAGAATGAATCAGCCAGTGGAGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGATGAGAAGGATCATGTCGTTGAAACCTCACTGGTGTTGCGGGCTAACCCTGCAGCCTTATCTAGATCCCGTAACTTTCATGAGAACTCCTGA 1464 0.4652 MQESRDPAIKLFGQKIPLPGDGELPAFAVADVEESESLGSMEVDTQEGGDGDDGEQQNSDEEKDEDDEDHSAGNTADKKKEAEDNPNSEETKSPDSSLGEASVNPKTPAIDEETAKSKSDNSEKEKNDAANAQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHISITEALQAARIDAPNGTHLPALKGNGRVLSFGLNAPLCDSMASVLNLAEKKVLNGVRNGFHSKGAETGGDDCSSASSITVSNSMEESGKNVPQESLLRTNGFSPPIPCLPGVPWPYPWNAPVPSHPLCPPGFPLSFYPAAFWNCGVPGNWNMPWFPPHPSAQQNHPISPTTTSSPNSPTLGKHSRDGDVIRTDNSQKQETSKPRNGRVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGGMFKAFQSKKDEKDHVVETSLVLRANPAALSRSRNFHENS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0618 487 Coils Coil 115 135 - -
Lele19g0618 487 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Lele19g0618 487 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Lele19g0618 487 MobiDBLite consensus disorder prediction 69 90 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 269 303 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 46 68 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 390 406 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 1 143 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 366 413 - -
Lele19g0618 487 MobiDBLite consensus disorder prediction 275 303 - -
Lele19g0618 487 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Lele19g0618 487 MobiDBLite consensus disorder prediction 111 142 - -
Lele19g0618 487 PANTHER CYCLIC DOF FACTOR 2 1 487 IPR045174 GO:0003700|GO:0006355
Lele19g0618 487 MobiDBLite consensus disorder prediction 370 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0618 Lele-ChrLele19 3563288 3565846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0618 1 485 C2C2-Dof Transcription Factor Family AT3G47500 49.008 4.31e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele19g0618 zf-Dof 2.5e-32 No_clan