Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1417 ATGTCGGAAGCAAATGACCCCGCGATCAAGCTCTTCGGGAAGACGATCCCGCTGCCGGAGATCCCCGCTGGATCTGGAGGCTCGGCCGGAGCTCCAGCTTCTTCTTCTGGGGATATTGCTGATGATGGTATTGATCACAATTGTGCTTCTCCCACCAACTCATCGCTAGAGTCCAACACGAAGAGGGACGAGGAAGAGCAAGAAACCGAGAAGGACACTTGGGGAGATAATCCAGATGAGAATATGGAGGATGGAGCCCCCATTCAATCTACAGAAGAGGTCACTAATCCAGATGCAGCCTCAAGGACGGGTGAAGAATTGGTTATGCCCCCTACTGAGAAGGACTCTACTATGTTGGAGGCTTCAAAATCTGAAGAAGAGCAGAGCGAGACAAGCAATTCACAAGAGAAGACTTTGAAAAAGCCGGACAAAATACTACCTTGCCCCCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAACTGCCAGCGATACTGGACTGCCGGTGGAACTATGAGGAATGTGCCTGTGGGTGCTGGTCGTCGAAAGAACAAGAATTCTTCTCACTATCGCCAAATAACTGTCACTGAAGCGCTCCAGACTGCTCGAACAGACATGCCAAATGGAGTACATCATCCTGCCCTGAAGCCCAATGGCACAGTCCTTGCCTTTGGGTCTGATGCACCTTTGTGTGAGTCAATGTCATCCATCTTGAACCTTGCTGATAGAACAATGCAGGACTGCACAAGAAATGGATTTCATAGGTCCGAAGAACTAAGAATTCCTATTCCCTATGCCAGTGAAGAGAAAGAAGATGATCATTCCAATAAATCTCCCGTGATGTCAACGAAGCCGATGGATGATACAAGCATCAACAGGCAACAAGAACAAGCAATGCAGAACTGTCAGAGTTTCCCACCTCAAGTTCCTTACTATCCTGGGGCACCTTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCAGTACCACTGCCCGCGTTTTGCCCTCCAGGATTTACCATGCCATTCTATCCTGCAGCTGCATATTGGGGTTGTACTGTCTCAGGTGCTTGGAACATACCATGGCTACCGCAACCATCATCACCGAACAGCATGGGCCCTAATTCTGGCCCTAACTCGCCAACCCTGGGTAAACATTCAAGAGAAGAAAACATGCTCAAGATAAATGACTCAGGGGGAGATATTGAACGTGGTAAAGAAAATGGAAAAGAGAAGCGCCTTTGGGTTCCTAAAACTTTGAGGATCGATGACCCAGGAGAAGCAGCTAAAAGCTCTATATGGACAACACTTGGGATTAAGAATGATAAGGCTGGGTCAGTTCAAGAGGGAGGACTCTTTAGGGCATTCTCATCAAAGGGCGACGGAAAAGATCATTCAACACAAAACTCAACAGTTTTGCAGGCCAATCCAGCGGCGTTGTCTAGGTCACTCAACTTTCATGAGGCCTCATAA 1518 0.4829 MSEANDPAIKLFGKTIPLPEIPAGSGGSAGAPASSSGDIADDGIDHNCASPTNSSLESNTKRDEEEQETEKDTWGDNPDENMEDGAPIQSTEEVTNPDAASRTGEELVMPPTEKDSTMLEASKSEEEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSHYRQITVTEALQTARTDMPNGVHHPALKPNGTVLAFGSDAPLCESMSSILNLADRTMQDCTRNGFHRSEELRIPIPYASEEKEDDHSNKSPVMSTKPMDDTSINRQQEQAMQNCQSFPPQVPYYPGAPWPFPWNPVQWSSPVPLPAFCPPGFTMPFYPAAAYWGCTVSGAWNIPWLPQPSSPNSMGPNSGPNSPTLGKHSREENMLKINDSGGDIERGKENGKEKRLWVPKTLRIDDPGEAAKSSIWTTLGIKNDKAGSVQEGGLFRAFSSKGDGKDHSTQNSTVLQANPAALSRSLNFHEAS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1417 505 MobiDBLite consensus disorder prediction 58 78 - -
Lele16g1417 505 MobiDBLite consensus disorder prediction 17 144 - -
Lele16g1417 505 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Lele16g1417 505 MobiDBLite consensus disorder prediction 383 402 - -
Lele16g1417 505 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Lele16g1417 505 PANTHER CYCLIC DOF FACTOR 2 1 504 IPR045174 GO:0003700|GO:0006355
Lele16g1417 505 MobiDBLite consensus disorder prediction 477 491 - -
Lele16g1417 505 MobiDBLite consensus disorder prediction 383 401 - -
Lele16g1417 505 MobiDBLite consensus disorder prediction 273 302 - -
Lele16g1417 505 MobiDBLite consensus disorder prediction 273 292 - -
Lele16g1417 505 MobiDBLite consensus disorder prediction 469 491 - -
Lele16g1417 505 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Lele16g1417 505 MobiDBLite consensus disorder prediction 118 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1417 Lele-ChrLele16 8079366 8082248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1417 6 505 C2C2-Dof Transcription Factor Family AT5G39660 44.359 5.43e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele16g1417 zf-Dof 3.2e-32 No_clan