Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1812 ATGACAAGGGACGTCGTCATGAACATTGATGGTGATGATAAAGAATTTCAAGAATTGGCTCAGCGACTACGAGATGGTAAAAAAACCACGAAAGAGGGAGTTGCCCGTGTCGAACATAGTTTCCGTGAGGATGATGAGTTAAAAAGTAACGGAACAGCTGAAGAAGTTAAAGTGGGACAATATGGGATTGGGGAGGCCCCAGCCGTTCAGCATATGCCACAACAACAGCCTCAAGGTGCAATTTGGGAGAGATTCCTACATCTCAGATCCCTCAAGGTCTTGCTCGTGGAGATAGATGACTCTACTCGTCATGTTGTGGCAGCACTGCTTCGCAACTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCATGGAAGATCTTGGAAGATCTAACCAATCAAATAGATCTTGTTTTGACTGAGTTAGCGATGCCTTGCTTATCAGGCATTGGCCTTCTGTCCAAAATTATGGCCCACAAAACGCGGAAAAACATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTTGTGAAACCTATACGGAAGAATGAACTTAAAAACCTGTGGCAGCATGTGTGGAGAAGATGTCATAGTTCAAGTGGTAGTGGTAGTGGTAGTGGAAGTGAAAGTGGCACGCAAACTCAGAAATCCATTAAATCAAAGAGTCTTAAGCAGTCTGATAACAACAGTGGCAGCAATGATGAAGAAGACAATGGTAGTGTAGGGCTAAATAACGGGGATGGAAGTGACAATGGTAGTGGTACTCAGAGCTCATGGACTAAACAAGCTGTAGAAGTTGACAGTCCCAAACCATCCCAGTGGGATCATATAGCTGAGTGCCCTGATAGCACCTGTGCTCAAGTTGTTCTCTCAAATGCCGAAATTAGTGGAAACAAGGTGTTTTCTGTGGCCATAAAGGAGTGTCCAGATCAGAAGGATCAGCTTGAGCTGAAAGTGGACTCGAGTAGGGATCTTGGCTTGATTCTTGACTATAGAAATGAGGATTTAGCCAATAATTTGGGCGAAAAGCATAGTAACCCACTTGATATAGGCTCCTCTAAATTCAATGAGCAACTTAATAGAGGACAGCTGGAACATCACTGTGAAGATCCTTCTAGCAAATTGAGATGCAGAGGTCCATTTCAGTCTGATGCTGTTGCTATTACATATGATTTGCGGATTCATGGTGGAGAATTTGAAGCCTCAAATAGAAGAGCCAAGCCCTCAGATACTGAAAGTAAAGTTATTAATGATAATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGACTTAGGGGAGTTAAAGATGCTGGGATTACAATTCAGGATGAACGTAATGTTTTAAGACGATCAGACCTTTCAGCCTTTTCAAGGTACAATGCGGCTTTTAATGCTAAGAAATCTCCTGGTGGCTGTGCTGGAAGCAATTCTCCCCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCGTCACGTGACATCCAATCCCATTCTAGCGGAAATCCCCCTAACCAGAACTCGAATGGTGCCAGCAATAACATTGACATGGGCTCCACGACTGATAACGCTTTCACTAAATCTGCTGTTATGAGCAAGACAACTGTGGTGTCACCGAGTAAAAGTTTGTATCAATCTTCTGCCTTCCAGCCTATAAAAAACAACTTCATGTGTACCTCTCAACAAGTTGCAGTACATAGTACTGAAGATGTGACAGCCTCAACTGTGCTAGAACCACCTAGAGGAGGTATACACAAGGACTCTCCAACACAGGGCTTCCACGGCATGTACAATAACCATAGCTGTATCGTTAACAACATGCAGCATCAGCTACCCCCAGACCATGATGATGCATCATCAAAGAAAATTGCTGGCACAGCTCCACACTGTGGGTCATCAAATCGAGGTGGTGATGCTAGTGGGAGTGGCAGTGGAAGTGCTAACAGAATAGATCAGAAGAAGACTTCTCAAAGAGAAGAAGCCTTAACTAAATTTCGCCAGAAGAGAAAAGAAAGGTGCTTTCGGAAAAAGGTTCGATATCAAAGCAGAAAGAAATTAGCTGAACAACGACCTCGCTTTCGCGGACAATTTGTTCGGCAGGCCTCCAACAAGAGTACAAGTGAGGCAGAAGAGGCAACTGACAGCTGA 2199 0.432 MTRDVVMNIDGDDKEFQELAQRLRDGKKTTKEGVARVEHSFREDDELKSNGTAEEVKVGQYGIGEAPAVQHMPQQQPQGAIWERFLHLRSLKVLLVEIDDSTRHVVAALLRNCSYEVIEAANGLQAWKILEDLTNQIDLVLTELAMPCLSGIGLLSKIMAHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSGSGSESGTQTQKSIKSKSLKQSDNNSGSNDEEDNGSVGLNNGDGSDNGSGTQSSWTKQAVEVDSPKPSQWDHIAECPDSTCAQVVLSNAEISGNKVFSVAIKECPDQKDQLELKVDSSRDLGLILDYRNEDLANNLGEKHSNPLDIGSSKFNEQLNRGQLEHHCEDPSSKLRCRGPFQSDAVAITYDLRIHGGEFEASNRRAKPSDTESKVINDNEELPSLELSLKRLRGVKDAGITIQDERNVLRRSDLSAFSRYNAAFNAKKSPGGCAGSNSPHNNSLEVTKKDSSRDIQSHSSGNPPNQNSNGASNNIDMGSTTDNAFTKSAVMSKTTVVSPSKSLYQSSAFQPIKNNFMCTSQQVAVHSTEDVTASTVLEPPRGGIHKDSPTQGFHGMYNNHSCIVNNMQHQLPPDHDDASSKKIAGTAPHCGSSNRGGDASGSGSGSANRIDQKKTSQREEALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRFRGQFVRQASNKSTSEAEEATDS 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1812 732 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 280 IPR045279 GO:0009736
Lele13g1812 732 MobiDBLite consensus disorder prediction 624 732 - -
Lele13g1812 732 Gene3D - 90 246 - -
Lele13g1812 732 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Lele13g1812 732 MobiDBLite consensus disorder prediction 485 537 - -
Lele13g1812 732 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Lele13g1812 732 MobiDBLite consensus disorder prediction 216 284 - -
Lele13g1812 732 CDD psREC_PRR 93 196 - -
Lele13g1812 732 FunFam Two-component response regulator-like PRR37 91 253 - -
Lele13g1812 732 SMART REC_2 91 206 IPR001789 GO:0000160
Lele13g1812 732 MobiDBLite consensus disorder prediction 216 292 - -
Lele13g1812 732 MobiDBLite consensus disorder prediction 513 537 - -
Lele13g1812 732 Pfam CCT motif 675 717 IPR010402 GO:0005515
Lele13g1812 732 ProSiteProfiles CCT domain profile. 675 717 IPR010402 GO:0005515
Lele13g1812 732 MobiDBLite consensus disorder prediction 488 502 - -
Lele13g1812 732 MobiDBLite consensus disorder prediction 669 684 - -
Lele13g1812 732 MobiDBLite consensus disorder prediction 685 700 - -
Lele13g1812 732 MobiDBLite consensus disorder prediction 650 668 - -
Lele13g1812 732 SUPERFAMILY CheY-like 89 214 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1812 Lele-ChrLele13 26223581 26231582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1812 167 719 Response Regulator Gene Family AT5G02810 45.739 1.41e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele13g1812 Response_reg 2.7e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1812 13 26223581 26231582 Lele15g0595 15 3500210 3508385 hybridization
Lele13g1812 13 26223581 26231582 Lele16g0610 16 3427459 3434810 hybridization