Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1383 ATGAGCGGTCCTGGAGACATGTCTCACAAGGATCCGGCTATCAAGCTATTTGGCAGGAAGATTCCCTTGCCGGAATGTCAGATTCCGGTGACCTCCCCAATGCCTTCTCAGATTCCGGCCAACTCCAGAGCCATGGATGCTTGCAGTAGCTTGAAGAGCACAGAAGTGGAAAAAGTTTGTGCAGAAAACTCTCAGCAACAAGATAATACCTCTGATTTAGCGGCAAGTAAAGAAGGGTCCCAACATAATCAGCTAGAAAATGAGCCCAAAGCCAATCCCAAGACTATGGAGAATAGAGCGGAAACTAGCAGCACAGATCAAGATAAATCATTCAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAGCCTCGACATTTCTGCAAGAACTGCCAACGGTATTGGACTGCTGGTGGAACGATGAGGAATGTCCCGGTGGGTGCTGGGAGACGAAAGAACAAGCACTTAGCCTCTCAGTTTCGCCACATCATAGTGTCCTCTGATGGCATTTCAACCTCTAGGTTGGAGACCACAGACTCATCTAGTCACCAGCTTATCTCATCTCCTGAATCTTCAGCTGCTTTCAGGTCTTCAATGGCAATGGATAATGGTATCGTATTGAAATTCGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAGACAATGCTTACTATTAGAGACCACAAAAGGAAAGTTGATGCAGAAAAGGGGAAAGAACCATCTTTATGTGGATCTTCAGTAGCAAATAGTAGTGGCGCAGAACTTGTCACGCAAAAGGAGCAGTGTGTTTCTAATCAGCTTAGCACATCAAATCAGATGCAATGTTACCCTGTTCCTCCACTGCTGTTTCCCTGGAATCCAGATTGGAACAATGTCGTTTCTATGGCCGCAATTCATCAATCTTCAGCGCCAATGCAGCGGTATCCTACTCCGTTGGTGGCAGTTCCTGGCGTGTGCCCACCCGGCATTCCTGTACAATATGCACCACCGTCATATTGGTCTGGTGGCACCGGGACAATCTCAATAGGGTCTAACGGTTGCCTTTCGCCGTCATCGAGTAATAGCTGCTGCTCAGGCAATGGCTCTCCAACTTTGGGAAAGCACTCTAGAGATACGTTCTTTGCAGATGAAGAGAAGTGTGTTCTGGTTCCAAAGACTCTTAGGATTGATGATCCAAATGAAGCCTCAAAAAGTCCCATATGGACTACATTAGGTATAAAGCCTGACAAGAAGGAGTCTGAATCATCAAAGGACTTGGAAGCTGAAGGAGATGGAAAAGACCGTGTGTTGGGTGTTTCTCAAATTTTGGTAGCTAACCCAGCTGCTATCTCTAGGGCGCATGCATTCCAGGAGAGCATACAATGA 1419 0.4623 MSGPGDMSHKDPAIKLFGRKIPLPECQIPVTSPMPSQIPANSRAMDACSSLKSTEVEKVCAENSQQQDNTSDLAASKEGSQHNQLENEPKANPKTMENRAETSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSSDGISTSRLETTDSSSHQLISSPESSAAFRSSMAMDNGIVLKFGPDAPPLCESMETMLTIRDHKRKVDAEKGKEPSLCGSSVANSSGAELVTQKEQCVSNQLSTSNQMQCYPVPPLLFPWNPDWNNVVSMAAIHQSSAPMQRYPTPLVAVPGVCPPGIPVQYAPPSYWSGGTGTISIGSNGCLSPSSSNSCCSGNGSPTLGKHSRDTFFADEEKCVLVPKTLRIDDPNEASKSPIWTTLGIKPDKKESESSKDLEAEGDGKDRVLGVSQILVANPAAISRAHAFQESIQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1383 472 MobiDBLite consensus disorder prediction 28 113 - -
Lele13g1383 472 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Lele13g1383 472 MobiDBLite consensus disorder prediction 30 49 - -
Lele13g1383 472 PANTHER CYCLIC DOF FACTOR 2 9 470 IPR045174 GO:0003700|GO:0006355
Lele13g1383 472 MobiDBLite consensus disorder prediction 56 100 - -
Lele13g1383 472 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Lele13g1383 472 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1383 Lele-ChrLele13 23592418 23594760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1383 11 470 C2C2-Dof Transcription Factor Family AT5G39660 35.057 1.81e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele13g1383 zf-Dof 2.7e-32 No_clan