Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0852 ATGGCTGATGTGAAGAACGGCCAAGATAATCATCAGGGGATAAAGCTGTTTGGGGCCACGATCACGTTGCATCGGGGAAGACAAGTGGATCAGAAGGTGGAGGAGGATCGGACCACGCCGGAGAAGAGGCCGGACAAGATCATACCGTGTCCAAGGTGTAACAGCATGGATACCAAGTTTTGTTACTTCAACAACTACAACGTTAATCAACCAAGGCATTTCTGTAAGGGGTGCCAGAGATACTGGACGGCCGGCGGCGCGCTCCGGAACGTGCCCATCGGTGCCGGCAGGAGGAAGGCCAAGCCACCTTGCCGTGGGGCCGCTGGATTCTCGGAGGGTTGTGGGTACGAGGAGTCTGTCGACGGCGGTCACCACCGCCAGTTTGGTCTGGAGGAGGGGTTGAATATTATGGAGGAGTGGCATGTTGCGATGGTTCAGAGTGGTTTCCGGCACCTTTTGCCAGCAAAACGGCCGAGGAACACCATTGCCGGCCAACCCTTTTAA 504 0.5595 MADVKNGQDNHQGIKLFGATITLHRGRQVDQKVEEDRTTPEKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCRGAAGFSEGCGYEESVDGGHHRQFGLEEGLNIMEEWHVAMVQSGFRHLLPAKRPRNTIAGQPF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0852 167 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Lele13g0852 167 PANTHER CYCLIC DOF FACTOR 2 35 101 IPR045174 GO:0003700|GO:0006355
Lele13g0852 167 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Lele13g0852 167 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0852 Lele-ChrLele13 20126512 20127015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0852 10 165 C2C2-Dof Transcription Factor Family AT1G29160 52.809 1.45e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele13g0852 zf-Dof 2.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0852 13 20126512 20127015 Lele13g0852 13 20126512 20127015 ECH
Lele13g0852 13 20126512 20127015 Lele15g1626 15 9669497 9670000 hybridization
Lele13g0852 13 20126512 20127015 Lele16g1657 16 9623076 9623579 hybridization