Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0561 ATGTCGGCCAACGCCAACCATCCCGGTTTTATACTCTTCGGCCAAAAGATGTCCTCCTCCTCCTCGCCATCTCAGATTCCGGCCGCCTCCAACTCTCCTCCCCAGCATGATCGAAGTAGCTCAAAGAAATCGGGAGTGGGAATGCCTTCTACAGAAAACTCCGAACAACAAAATGTGCAGCAAAATGAGGCAACGAGGGTAAGCAGTGCAGAAGAATTTAAAATGATGAAGAAACCAGACAAGATTCAACAGTGTCCACGATGCAACAGTATGGACACAAAGTTCTGTTATTTCAATAACTACAACGTGAATCAACCTCGACATTTCTGCAAGAGCTGCCACAGATATTGGACTGCCGGTGGAGCAATGAGAAATGTCCCAGTCGGTGCAGGAAGACGAAGGAACAGGCAACTATCCTCGCCATACCATCGCCACACCGCAGTATCCTCCGAAGGCATTCCAGTTCCAACCCCAAACACAGACTCATCTTCTCACCAAGGTTTCTCTACTCTTGAATCCTCGCCTGCTTTCAAGTCAGCACCACCAGATAATACTAGCACCGTGTTGAGATTTGGTACAGAGGCCCCTGTTTCTGAATCCGCGAGTTCAATTCTGAATCTTGGAAATGGGGAGGAGGCATCCGGGAGTGGATCTTCTGCTCAGGGAAATGAAGTATCAGAACTTGCAATGCAATGGAGCAGTGGTGTGCCCAATCTGATGAATACAACAAATGGTGTGCGATGCTATCCTGCTGCACCATGGGTGTTCCCAGCCCAGTGGTATGCTGAGAATCAGATTGGCTCACCAAACATTCCTGTACAAATTGTGGCAGCCCCATGTTGGAGTAATGGGAATATCTGTTCTGCACCAGCAACAGGAACAGTTTCAATTGGCTCTAATGGCTGCCTCTCCTCCTCATTCTCAACCAGTAATGGACTTGGAAAACACTGGTGA 954 0.4832 MSANANHPGFILFGQKMSSSSSPSQIPAASNSPPQHDRSSSKKSGVGMPSTENSEQQNVQQNEATRVSSAEEFKMMKKPDKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCHRYWTAGGAMRNVPVGAGRRRNRQLSSPYHRHTAVSSEGIPVPTPNTDSSSHQGFSTLESSPAFKSAPPDNTSTVLRFGTEAPVSESASSILNLGNGEEASGSGSSAQGNEVSELAMQWSSGVPNLMNTTNGVRCYPAAPWVFPAQWYAENQIGSPNIPVQIVAAPCWSNGNICSAPATGTVSIGSNGCLSSSFSTSNGLGKHW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0561 317 MobiDBLite consensus disorder prediction 13 68 - -
Lele08g0561 317 Pfam Dof domain, zinc finger 80 137 IPR003851 GO:0003677|GO:0006355
Lele08g0561 317 PANTHER CYCLIC DOF FACTOR 2 1 316 IPR045174 GO:0003700|GO:0006355
Lele08g0561 317 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Lele08g0561 317 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Lele08g0561 317 MobiDBLite consensus disorder prediction 1 84 - -
Lele08g0561 317 MobiDBLite consensus disorder prediction 141 186 - -
Lele08g0561 317 MobiDBLite consensus disorder prediction 134 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0561 Lele-ChrLele08 3398376 3400046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0561 51 260 C2C2-Dof Transcription Factor Family AT5G39660 38.914 3.78e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele08g0561 zf-Dof 2.8e-31 No_clan