Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0318 ATGGAGAATGGAAAATTCGACCCTTCTATTTCTCCCTCTGATAAGATCTCGCATGTTTCATCTTTCTGGAAATATTCTTCAGTTTTGAATTTGATCGATGTCGCTCATGTGAGGTGCAAATCTACAATCGAGCCCTGCTCCATCTCCGGTTCCTGCAATGCTCTGCTCGGATATACGCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCAATTGCTCTTCTCACTGCCAATGCCATTGACATTTCTTATCCCGACGGGGAGCATCACATTCTTCCCTCTCGGCTCTTCCTCAAAATCCCTATTACCTGTTCGTGTGTTGATGGAATTCGCAAATCGGTATCGACCCACTACAAAACTCGGCCCTCTGATACTCTCTCTTCGATTGCGGATTCGATATATGGGGGTCTGGTGTCTGCTGACCAGCTCAGGGAAGCCAATTCGATAAATGACCCTTCGGTACTGGATGCGGGTCAGAATATTGTCGTGCCGCTTCCATGCACCTGCTTCAATGGTACCGATAACTCTTTGCCTGCAATCTACCTGTCGTATGTGGTCCAGCCAATCGATACTTTAGCCGCAATTGCCGCGAGGTATTTCACCACTCTGACTGATTTGATGAACGTCAATGCCATGGGAAGTTCAGCTATCAACGATGGCGATATTCTCGCTATACCGATACCCGCTTGTGCATCAAATTTCCCAAAATATGCCTCTGATAACGGTTTGCTTGTCCCTAACGGAAGCTACGCCATCACAGCGGGTCACTGTGTGCTATGTAGCTGTGGGCCACGAAATTTAAAGTACTGA 828 0.4758 MENGKFDPSISPSDKISHVSSFWKYSSVLNLIDVAHVRCKSTIEPCSISGSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDGEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSINDPSVLDAGQNIVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNAMGSSAINDGDILAIPIPACASNFPKYASDNGLLVPNGSYAITAGHCVLCSCGPRNLKY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0318 275 ProSiteProfiles LysM domain profile. 122 169 IPR018392 -
Lele04g0318 275 ProSiteProfiles LysM domain profile. 188 231 IPR018392 -
Lele04g0318 275 Gene3D LysM domain 178 240 IPR036779 -
Lele04g0318 275 SMART LysM_2 123 170 IPR018392 -
Lele04g0318 275 SMART LysM_2 189 232 IPR018392 -
Lele04g0318 275 Gene3D LysM domain 116 177 IPR036779 -
Lele04g0318 275 CDD LysM 122 169 IPR018392 -
Lele04g0318 275 SUPERFAMILY LysM domain 188 233 IPR036779 -
Lele04g0318 275 CDD LysM 189 231 IPR018392 -
Lele04g0318 275 Pfam LysM domain 124 170 IPR018392 -
Lele04g0318 275 Pfam LysM domain 190 232 IPR018392 -
Lele04g0318 275 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 39 272 - -
Lele04g0318 275 SUPERFAMILY LysM domain 122 171 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0318 Lele-ChrLele04 1859422 1860974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0318 40 273 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 77.966 2.40e-133 382