Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0323 ATGTTACCGCATAGAACAGGAAAATTCGACCCTTCTATTTCTACCTCTGATAAGCTCTTTCCCTCGCATCTTTCATCTTTCTGGAAATATTCTTCAGTTGCACATCACATTCCACTCCTTAGTGTTGATAGCATATCATCTTCATCTAGTCTCGCTTTCCCTGGAGGAGGGCAGCTAGATAAAGACGTTGCCACAATGCCAAACAGAAAATCCACCTTGCAAAGCACTATCGTCTTGTTACTTTTGCAGGTCTTGAATTTGATCAATGTCGCTCATGTGAGGTGCAAATCTACAATCGAGCCCTGCTCCAACTCTGACTCCTGCAATGCTCTGCTCGGATATACTCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCAATTGCTCTTCTCACTGCCAATGCCATTGACATCTCTTATCCCGACGTGGAGCATCACATTCTTCCCTCTCGGCTCTTCCTCAAAATCCCTATTACCTGTTCGTGTGTTGATGGAATTCGCAAATCGGTATCGACCCACTACAAGACTCGGCCCTCTGATACTCTCTCTTCGATTGCGGATTCGATTTATGGGGGTCTGGTGTCTGCTGACCAGCTCAGGGAAGCCAATTCGATAAGTGACCCTTCGGTACTGGATGCGGGTCAGAATCTCGTCGTGCCGCTTCCATGCACTTGCTTCAATGGTACCGATAACTCTTTGCCTGCAATTTACCTGTCGTATGTGGTCCAGCCAATCGATACCTTGGCCGCACTTGCCTCGAGGTATTTCACCACTCTGACTGATTTGATGAACGTCAATGCCATGGGAAGTTCAGCTATCAACGATGGCGATATTCTCGCTATACCGATACCCGCTTGCGCAACAAATTTCCCAAAATATGCCTCTGATCATGGTTTGCTTGTTCCTAACGGAAGCTACGCCATCACAGCGGGTCACTGTGTGCTATGTAGCTGTGGGCCGCAAAATTTAAATTTATACTGTATGCCTGCTTCCCTGGCTGTTTCTTGTTCCAGCATGCAATGTAAAAGAAGCAATCTCATGCTCGGAAATGTTACAGCGCAACAGAATAGTGGTGGTTGCAGTGTTAATTTTTGCAATTATGACGGTTTTGCTAATGGCACTATAATAACAGCATTGTCTACATCTCTTCAACCTCGATGTCCAGGGCCGCAGCAATTTCCTCCACTCGCAGCACCGCCTACTACTGTTCCAAGAGCTTCCATATTTGCACCAGCACCGTCACCTCTGTCAGATGGAGCTAGTCCTTTATCACCCAAATCACCAGTGGTGCCAGCGACGGGGTCGTTTCCAGGGGTCCAACCTGCAAATGGCCCTATTAGTGGCCTTACTTCTGGTGCTTCCGGTGCTTGCTCCTTAGTGAATCCTTTGCCTACTTTGACATCTGCGCTTGCGTTTTCGCTTGTCAAGTTGATGATCTCTATGCGCGGTCAACTTCAGAGGGTTCACGTCTTTCTTGATGAATTAGAGACGTCAAGTTTCATTCTTGACATGGTCAGCAGCAAAATTTTCATGTCTACAAATCCAGACTTGACATTATAA 1578 0.4683 MLPHRTGKFDPSISTSDKLFPSHLSSFWKYSSVAHHIPLLSVDSISSSSSLAFPGGGQLDKDVATMPNRKSTLQSTIVLLLLQVLNLINVAHVRCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSISDPSVLDAGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAALASRYFTTLTDLMNVNAMGSSAINDGDILAIPIPACATNFPKYASDHGLLVPNGSYAITAGHCVLCSCGPQNLNLYCMPASLAVSCSSMQCKRSNLMLGNVTAQQNSGGCSVNFCNYDGFANGTIITALSTSLQPRCPGPQQFPPLAAPPTTVPRASIFAPAPSPLSDGASPLSPKSPVVPATGSFPGVQPANGPISGLTSGASGACSLVNPLPTLTSALAFSLVKLMISMRGQLQRVHVFLDELETSSFILDMVSSKIFMSTNPDLTL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0323 525 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 78 397 - -
Lele03g0323 525 Gene3D LysM domain 236 295 IPR036779 -
Lele03g0323 525 CDD LysM 178 225 IPR018392 -
Lele03g0323 525 SUPERFAMILY LysM domain 244 289 IPR036779 -
Lele03g0323 525 ProSiteProfiles LysM domain profile. 244 287 IPR018392 -
Lele03g0323 525 ProSiteProfiles LysM domain profile. 178 225 IPR018392 -
Lele03g0323 525 SMART LysM_2 245 288 IPR018392 -
Lele03g0323 525 SMART LysM_2 179 226 IPR018392 -
Lele03g0323 525 CDD LysM 245 287 IPR018392 -
Lele03g0323 525 Gene3D LysM domain 172 233 IPR036779 -
Lele03g0323 525 Pfam LysM domain 246 288 IPR018392 -
Lele03g0323 525 Pfam LysM domain 180 226 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0323 Lele-ChrLele03 1800221 1805722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0323 96 464 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.889 0.0 546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0323 03 1800221 1805722 Lele03g0323 03 1800221 1805722 ECH
Lele01g0315 01 1807531 1810721 Lele03g0323 03 1800221 1805722 hybridization
Lele02g0309 02 1739220 1740007 Lele03g0323 03 1800221 1805722 hybridization