Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02258 ATGCTAAAATCAGGCATCAAAATTGAGGAGAAAAAGCAGGTGAAGAAAACAGCTCAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCTGAGAATGCCAGTTGCACCTACAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTCGGGACATTTGAAACCTCTCATGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGCCCTGATGCCAAACTCAATTTACCAGACATCTCTGTGCCCTCAATGAAACCATCTCAATCACAACCTCAGTGTCCACCACCACCACCACCTCCTGAAACCAACACTCAAATTCCTGAAACGGAGAACCTGCAACAGCCTCTGATTCAAAACAACATAGACATTCCAACTTGTTCTAATTACAATTTCAATCCTGCAGTCTCCATGGCCTCTCAGGAAGTTGGAGTTACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTGGACACCAATCCCAAGCCAATTGAAACCTACACAAAACCTGAGGGGATCGAGGGGGATTTTTGTCCATCTTGGGAGACAATGAACGAGGGTTTACCGGTTTTTGATGATTCTATCTGGGCTGAAGCTGCTATGTCTCTTGATTTTCCTCTAATTGCAGCAGAGACTGAGATTTACACACAGGAGAACAACTTGGCAGGTGTGGACATGTGGGACCCTCAGACTCCATGGTGCATGTAA 768 0.4674 MLKSGIKIEEKKQVKKTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGPDAKLNLPDISVPSMKPSQSQPQCPPPPPPPETNTQIPETENLQQPLIQNNIDIPTCSNYNFNPAVSMASQEVGVTPIYTSDCIVSLPLDTNPKPIETYTKPEGIEGDFCPSWETMNEGLPVFDDSIWAEAAMSLDFPLIAAETEIYTQENNLAGVDMWDPQTPWCM* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02258 255 MobiDBLite consensus disorder prediction 107 123 - -
Lapu9g02258 255 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lapu9g02258 255 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 203 - -
Lapu9g02258 255 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 MobiDBLite consensus disorder prediction 13 34 - -
Lapu9g02258 255 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Lapu9g02258 255 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lapu9g02258 255 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Lapu9g02258 255 MobiDBLite consensus disorder prediction 97 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02258 Lapu-Chr9 37152585 37153352 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu9g02258 AP2 3.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02258 9 37152585 37153352 Lapu9g02258 9 37152585 37153352 ECH
Lapu8g00992 8 28011459 28013012 Lapu9g02258 9 37152585 37153352 PCT