Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02196 ATGGCGAAATCGAGCGCCGACGATGCCGAGCTTCGGCGAGCGTGCCAGCTCGCAGTCGAGGGCACCAAGAACGTGGTCGTTCTCTCCATTCGGACCGTCAAGACTCACGGCACATGGGGAAAAACTGCTAAGCTCGGTCGTCAAATGGCTAAGCCTAGGGTTCTCGCTCTCTGCACAAAAGCGAAGGGTCAGCGGACAAAAGCTTTTCTTCGAGTTTTTAAGTATTCAACAGGAGGGGTGCTTGAGTCTGCTAAGTTATACAAGCTGAAGCACCTCTCAAAAATGGAAGTTGTAACAAATGACCCCAGTGGATGTACATTTACACTGGGGTTTGATAATCTTAGAAGCCAGAGTGTGGCTCCTGCACAGTGGACAATGCGCAATACCGATGACAGAAATCGCCTACTGCTTTGTATCTTAAATATCTGCAAAGATGTCCTGGGTCGCCTACCTAAGGTTGTTGGTATTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTTCTGCTCAAAGTAAACAACAAGGTGGTGCTTCAGTTGAATCTTCTGTGACTGAAACAGAATTGAAAGTCTATGTCGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTCTGGGAACTTATATCATGGGTGTTGGTGAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAGCTCCAAGCTCTCGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATAGACGAGGTGTTGTACGGGCTTGAATCAGCGACAAATCGTGTGGAAGACATGGATGAATGGTTAGGCATGTTCAATATAAAACTCCGACACATGAGGGAAGATATTGAATCGATTGAAACCCGCAATAACAAGTTGGAAATGCAAAATATAAATAACAGAACTCTTATTGAAGAGCTTGATAAGCTTCTTGAGCAATTGAGTATCCCTTCTGAGTATTCAGCATGTTTGACAGGAGATTCATTTGTCGAAGCACAAATGCAGCAAAATATAGAAGCATGTGAGTGGTTGGTAACTGCCATGCGTGGTCTAGAAGTGCCTAACATAGATCCTACTTACGCAAAAATGAGAGCAGTTAAAGAGAAGCGAGGAGAACTTCAAATAATAAAGTCTACTTTTGTTGGGAAAGCTTCTGAATACATGAGAAGTTACTTTGCTAGTTTTGTGGACTTCATGTTGAATGATAAAAATTACTTTTCTCAGCGAGGACAGTTGAAAAGGCCAGATCATGCTGACTTGAGGTTCAAGTGCAGGACATATGCACGCCTTCTTAAGCATTTGAAGATTCTTGACAAGAATTGTTTGACTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAATTTGCTTCTTCGCAGGGAGGCCCGCGAATTTGCTAATGAACTTCGTCTTGGTGTGAAAACTTCTAAAACCCCCTCTGTTTGGCTTGAAGTCTTCACGGGTTCTAGTCAAAATGTTACTCCTGCTGATACTGCAACAGTTTCTGAAGCATATGCAAAGATGCTCACAATTTTTATCCCACTTCTAGTGGATGAGAGCTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTTCAACTGTTGATGGTAATAAAACTAAACACAATGACGAGGATAATATTGATAATGATATTACATCTGGTAAAACTGTTGTGGATCTTGTAGCTTTGAATGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGATTTCTCAGCTGTTGTGGATTGGGCATATAAAATTGATCCTTTATGCTGCATATCAATGCATGGAACTACAGAGCGTTATCTCTCTAGTCAGAAAGGTGATGCAGCAGGATATGTGCGCGTTTTGCTTGATGACCTAGAGTCTCGCATATCCATGCAGTTCAGCCGAATTGTGGATGATGCTTGCCATCAAATTGAAAGAAATGAGCGCAATGCTCGCCAAATGGGTGTCCTACCATACATTCCTAGATTTGCTGCCCTTGCAACACGAATGGAGCAGTTTGTTGCAGGACAGACGAGGGATTTGGTTGACCAAGCATACACAAAATTTGTCAGCATAATGTTTGTAACTTTAGAAAAAAATGCACAAGCAGATCCGAAGTATGCAGATATTTTTCTTATAGAAAACTACGCCGCATTTCAGAATAGCTTGTATGACCTTGCAAATGTTGTGCCCACTTTGGCGAAGTTTTATCATCAGGCTAGTGAAGCCTACGAGCTAGCTTGCACACGCCATATTAGTGTGATTATCTACTATCAATTCGAACGCCTTTTCCAGTTTGCTCGAAAGATTGAGGACTTGATATTGAATAATGTTGCACCTGAAGAGATTCCTTTCCAAGTTGGGCTGTCAAAAGTCGATCTACGAAAGACGTTAAAGTCCAGTTTATCCGGGGTGGATAAGTCCATTGCTGCGATGTATAAGAAGTTGCAGAAAAACTTGACTTCGGAGGAACTGTTACCTTCTCTATGGGATAAATGCAAGAAGGATTTTCTCGATAAGTACGAAACGTTTGTCCAACTAGTCGCCAAGATATACCCTGCTGAGTCAGTCCCTTCTGTAGCGGAGTTGCGAGACCTTTTAGCTTCCATGTAA 2619 0.4246 MAKSSADDAELRRACQLAVEGTKNVVVLSIRTVKTHGTWGKTAKLGRQMAKPRVLALCTKAKGQRTKAFLRVFKYSTGGVLESAKLYKLKHLSKMEVVTNDPSGCTFTLGFDNLRSQSVAPAQWTMRNTDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPAVSAQSKQQGGASVESSVTETELKVYVEKELVSQAEEEDMEALLGTYIMGVGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLYGLESATNRVEDMDEWLGMFNIKLRHMREDIESIETRNNKLEMQNINNRTLIEELDKLLEQLSIPSEYSACLTGDSFVEAQMQQNIEACEWLVTAMRGLEVPNIDPTYAKMRAVKEKRGELQIIKSTFVGKASEYMRSYFASFVDFMLNDKNYFSQRGQLKRPDHADLRFKCRTYARLLKHLKILDKNCLTPLRKAYCSSLNLLLRREAREFANELRLGVKTSKTPSVWLEVFTGSSQNVTPADTATVSEAYAKMLTIFIPLLVDESSFFAHFMCFEVPSTVDGNKTKHNDEDNIDNDITSGKTVVDLVALNESLQDLLDGIQEDFSAVVDWAYKIDPLCCISMHGTTERYLSSQKGDAAGYVRVLLDDLESRISMQFSRIVDDACHQIERNERNARQMGVLPYIPRFAALATRMEQFVAGQTRDLVDQAYTKFVSIMFVTLEKNAQADPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYELACTRHISVIIYYQFERLFQFARKIEDLILNNVAPEEIPFQVGLSKVDLRKTLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYETFVQLVAKIYPAESVPSVAELRDLLASM* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02196 872 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Lapu9g02196 872 Coils Coil 281 318 - -
Lapu9g02196 872 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Lapu9g02196 872 Pfam Exocyst complex component Sec3 224 495 IPR019160 GO:0000145|GO:0006887
Lapu9g02196 872 Pfam Exocyst complex component Sec3 500 855 IPR019160 GO:0000145|GO:0006887
Lapu9g02196 872 Coils Coil 221 248 - -
Lapu9g02196 872 PANTHER SEC3/SYNTAXIN-RELATED 60 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02196 Lapu-Chr9 36660285 36678319 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02196 9 36660285 36678319 Lapu9g02196 9 36660285 36678319 ECH
Lapu8g00919 8 27364072 27382840 Lapu9g02196 9 36660285 36678319 PCT