Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02171 ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACGCCGCCGCCGCCACCGCCGCAGCCTGTGCCTGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTTTGCCGCGCCGCCGCCGCCGCCGCAGACCTACGTTGCCTATCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAAACCGTATGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTCGTGGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCCTCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTACATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGACGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGAAATGACTGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTCGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACAAACACCACTATATTTGTTGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGACAGCCATTCTCCCAGTATGGTGAAATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCAGATTTAGGCAGTCCTTGGAACGGGTCGTATTATGGAGGACCTATTTATGATGGTTATGGATATGCTTTACCACCTCCTCATGACCCCAGTATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA 1263 0.4854 MQPTSNGSDSQATEQNQQTPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHFAAPPPPPQTYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMTGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADLGSPWNGSYYGGPIYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02171 420 CDD RRM3_NGR1_NAM8_like 289 360 - -
Lapu9g02171 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Lapu9g02171 420 Gene3D - 184 260 IPR012677 -
Lapu9g02171 420 FunFam Polyadenylate-binding protein RBP47B 173 275 - -
Lapu9g02171 420 MobiDBLite consensus disorder prediction 1 34 - -
Lapu9g02171 420 SUPERFAMILY RNA-binding domain, RBD 168 279 IPR035979 GO:0003676
Lapu9g02171 420 MobiDBLite consensus disorder prediction 265 291 - -
Lapu9g02171 420 Gene3D - 267 369 IPR012677 -
Lapu9g02171 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Lapu9g02171 420 CDD RRM2_SECp43_like 184 263 - -
Lapu9g02171 420 CDD RRM1_SECp43_like 93 173 - -
Lapu9g02171 420 SUPERFAMILY RNA-binding domain, RBD 280 390 IPR035979 GO:0003676
Lapu9g02171 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 353 IPR000504 GO:0003723
Lapu9g02171 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 255 IPR000504 GO:0003723
Lapu9g02171 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Lapu9g02171 420 Gene3D - 91 171 IPR012677 -
Lapu9g02171 420 SMART rrm1_1 186 260 IPR000504 GO:0003723
Lapu9g02171 420 SMART rrm1_1 93 168 IPR000504 GO:0003723
Lapu9g02171 420 SMART rrm1_1 291 358 IPR000504 GO:0003723
Lapu9g02171 420 FunFam Polyadenylate-binding protein RBP47 276 392 - -
Lapu9g02171 420 MobiDBLite consensus disorder prediction 1 16 - -
Lapu9g02171 420 FunFam Polyadenylate-binding protein RBP47C isoform A 91 171 - -
Lapu9g02171 420 SUPERFAMILY RNA-binding domain, RBD 63 158 IPR035979 GO:0003676
Lapu9g02171 420 MobiDBLite consensus disorder prediction 17 34 - -
Lapu9g02171 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 366 - -
Lapu9g02171 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Lapu9g02171 420 MobiDBLite consensus disorder prediction 261 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02171 Lapu-Chr9 36438199 36444857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02171 93 388 Eukaryotic Initiation Factors Gene Family AT2G23350 27.742 1.66e-21 95.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02171 9 36438199 36444857 Lapu9g02171 9 36438199 36444857 ECH
Lapu8g00904 8 27188151 27192390 Lapu9g02171 9 36438199 36444857 PCT