Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02130 ATTATCACCAAATATCGAAACAAAAAAAAAAAAAAAATGGGCACAAATAGATCTTCCACGCCCAAGATCCTCATCATCTTCTTCACCGTCTTGGCAGTGTCGTCCGCGTTGGACATGTCCATAATCTCGCACGACGAAACCCACGCGGACAAGACAGCGCGGAGGAGCGACGAGGAGGTGAGGAGCATATACGAGGAGTGGCTTGTGAAGCATGGCAAGGTGCATAGCGCCCTCGCCCAGAAAGAGATGAGGTTTCAGATTTTCAAAGACAACCTCAAGTTTATCGACGAGCACAATGCTGAAAACCGGACATACAAGGTTGGACTGAACCGGTTCGCAGATCTAAGCAACGAGGAATACCGGTCCAAGTACCTCAGAACCAAGATTAACCCCCTCAGGATGATGGCGAAGCCCAGTAACCGTTACGCTTGGCGCGTGGGTGACAACTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCAGTGGTGAGAGTCAAAGACCAAGCAGAGTGCGAGGGTTGCTGGGCATTCTCAGCAATTGCCGCAGTAGAAGGGATTAACAAGATAGTAACAGGCAATCTAACTGCATTGTCAGAGCAAGAACTATTGGATTGTGACAGAACAGTAAACGCAGGTTGTAGTGGGGGACTTGTGGATTACGCCTTTGAGTTCATTATAAACAATGGTGGCATTGACACCGAAGATGATTACCCCTTTCAAGGTGCTGATGGTATATGTGATCAAAATAAGCAAAATGCTAGAGCTGTTACTATTGATGGTTATGAACGTGTTCCTGCCTATGACGAGTTAGCCTTAAAAAAGGCAGTAGCAAATCAACCGGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAGTTATATGAATCAGGTATATTCACAGGAAGGTGTGGTACTTCAATAGATCATGGTGTTGCAGCTGTTGGTTACGGTACAGAAAATGGAAGTGAGTATTGGATCGTGAAGAATTCATGGGGTGAGAAATGGGGAGAGGAAGGTTATGTAAGAATGGAACGCAATATAGCAGAAGACACTGCAGGGAAGTGCGGAATTGCGATTCTCTCATTCTATCCCATAAAGAGTGGCCAAAATCCCTCAAAACGAACCCCACTGGGTCTTCCAGGTATG 1149 0.4621 IITKYRNKKKKKMGTNRSSTPKILIIFFTVLAVSSALDMSIISHDETHADKTARRSDEEVRSIYEEWLVKHGKVHSALAQKEMRFQIFKDNLKFIDEHNAENRTYKVGLNRFADLSNEEYRSKYLRTKINPLRMMAKPSNRYAWRVGDNLPESVDWRKEGAVVRVKDQAECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEDDYPFQGADGICDQNKQNARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGRCGTSIDHGVAAVGYGTENGSEYWIVKNSWGEKWGEEGYVRMERNIAEDTAGKCGIAILSFYPIKSGQNPSKRTPLGLPGM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02130 383 Pfam Cathepsin propeptide inhibitor domain (I29) 64 120 IPR013201 -
Lapu9g02130 383 Pfam Papain family cysteine protease 150 366 IPR000668 GO:0006508|GO:0008234
Lapu9g02130 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 308 318 IPR025660 -
Lapu9g02130 383 PRINTS Papain cysteine protease (C1) family signature 310 320 IPR000668 GO:0006508|GO:0008234
Lapu9g02130 383 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Lapu9g02130 383 PRINTS Papain cysteine protease (C1) family signature 168 183 IPR000668 GO:0006508|GO:0008234
Lapu9g02130 383 FunFam Cysteine protease 1 40 368 - -
Lapu9g02130 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 168 179 IPR000169 -
Lapu9g02130 383 CDD Peptidase_C1A 151 365 IPR039417 -
Lapu9g02130 383 SMART Inhibitor_I29_2 64 120 IPR013201 -
Lapu9g02130 383 SUPERFAMILY Cysteine proteinases 56 366 IPR038765 -
Lapu9g02130 383 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 55 359 IPR013128 GO:0008234
Lapu9g02130 383 SMART pept_c1 150 366 IPR000668 GO:0006508|GO:0008234
Lapu9g02130 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Lapu9g02130 383 Gene3D Cysteine proteinases 34 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02130 Lapu-Chr9 36022541 36024989 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02130 9 36022541 36024989 Lapu3g01514 3 17822470 17824940 ECH
Lapu9g02130 9 36022541 36024989 Lapu11g00787 11 10704041 10706530 ECH
Lapu9g02130 9 36022541 36024989 Lapu9g02130 9 36022541 36024989 ECH
Lapu8g00855 8 26731084 26736851 Lapu9g02130 9 36022541 36024989 PCT