Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02098 ATGGCTCTCCAAGCTCTTCAATCACCCACCACACCCAATCCATCTTTTAGTCCCTTCGAAGAAGCCAATCTCAGTTACTTAGATACACCCTGGGCCAAGCGAAAGCGTTCCAAGCGTTCCCGCATGGACCAACAACTACAACTACAACACCCTTCATGCACAGAGGAGGAGTACCTTGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCACGCGGCCCCACCGCCAAACCTGCTCTCTTGGACAACAACTCGGTGCCGCTCCCCGCCGCCAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGACACAAGGCCAGCCACCGGAAATCAGCCGGCGCTTCTGAAGACCAGCCGACCTCCTCCGGCGTGACGACGACTTCGGCCTCCAACGGCGGAGGTAGAACCCACGAGTGCTCCATCTGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGAGGCGGCGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCAGACTTGCCAACGAGGTTCTTCGCGGACGACGAGGTTTCCAGCCCCCATCCATCCAAGAAGCCCCGTCTCAATTTGACTCTACCCAAGCTTGAAATCCCTCAGTACTAA 717 0.576 MALQALQSPTTPNPSFSPFEEANLSYLDTPWAKRKRSKRSRMDQQLQLQHPSCTEEEYLALCLIMLARGGSRGPTAKPALLDNNSVPLPAAKLTYKCSVCNKAFSSYQALGGHKASHRKSAGASEDQPTSSGVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDLPTRFFADDEVSSPHPSKKPRLNLTLPKLEIPQY* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02098 238 MobiDBLite consensus disorder prediction 1 21 - -
Lapu9g02098 238 Gene3D Classic Zinc Finger 93 168 - -
Lapu9g02098 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
Lapu9g02098 238 Pfam C2H2-type zinc finger 95 119 - -
Lapu9g02098 238 Pfam C2H2-type zinc finger 146 169 - -
Lapu9g02098 238 SUPERFAMILY beta-beta-alpha zinc fingers 94 168 IPR036236 -
Lapu9g02098 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Lapu9g02098 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 200 IPR044653 GO:0003700
Lapu9g02098 238 MobiDBLite consensus disorder prediction 122 144 - -
Lapu9g02098 238 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Lapu9g02098 238 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Lapu9g02098 238 MobiDBLite consensus disorder prediction 116 144 - -
Lapu9g02098 238 SMART c2h2final6 146 168 IPR013087 -
Lapu9g02098 238 SMART c2h2final6 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02098 Lapu-Chr9 35760074 35760790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02098 1 235 C2H2 Transcription Factor Family AT1G27730 50.000 2.63e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g02098 zf-C2H2_6 2.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02098 9 35760074 35760790 Lapu9g02098 9 35760074 35760790 ECH
Lapu8g00832 8 26480349 26481460 Lapu9g02098 9 35760074 35760790 PCT