Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu9g02083 | ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAATCGAGTTTTCCACAAGGCATGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTCGACCAACTGTTCAAAAGAACTGGTAGTCTCGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACTGGCGATGAGAAACCTGCAGCAACCAAAGTCTTGAATATGTTTGGTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTCACTGTCAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAATTACATTGCACACGATGGCAAACTCTACTGCAAGCACCACCACATCCAGCTGATCAAGGAGAAGGGAAATTTAAGCCAGCTAGAAGGTGACCATGAGAAGAGTGCAATTCAAGAGAAAACCAACGGTGAAGTAGTTGCAGCTGAGACATGA | 591 | 0.4349 | MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDEKPAATKVLNMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKSAIQEKTNGEVVAAET* | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu9g02083 | 196 | PANTHER | OS06G0237300 PROTEIN | 4 | 93 | - | - | |
| Lapu9g02083 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Lapu9g02083 | 196 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Lapu9g02083 | 196 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Lapu9g02083 | 196 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Lapu9g02083 | 196 | Pfam | LIM domain | 109 | 163 | IPR001781 | - | |
| Lapu9g02083 | 196 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Lapu9g02083 | 196 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Lapu9g02083 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Lapu9g02083 | 196 | FunFam | LIM domain and actin-binding 1 | 103 | 173 | - | - | |
| Lapu9g02083 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Lapu9g02083 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Lapu9g02083 | 196 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Lapu9g02083 | 196 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Lapu9g02083 | 196 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Lapu9g02083 | 196 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
| Lapu9g02083 | 196 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
| Lapu9g02083 | 196 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu9g02083 | Lapu-Chr9 | 35633007 | 35635899 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Lapu9g02083 | LIM | 2.7e-13 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu9g02083 | 9 | 35633007 | 35635899 | Lapu9g02083 | 9 | 35633007 | 35635899 | ECH | |
| Lapu8g00818 | 8 | 26354171 | 26356103 | Lapu9g02083 | 9 | 35633007 | 35635899 | PCT |