Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01391 ATGTTCCCACATACCCTTATTGGTGCTTCTGGGCTTCAACAAATGCTGCATCATCATCATCATCATCACTTTCCAACCCCAATGGAACAACGTTCCAGGTGGAAACCCAACATTGAGGTGGCACCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCCCGCTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGTGGCTCTCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAGAACCGCCGCGGAAAGTCCTCCTCCCGCCACCACCAAAATCAAAGCTCTTTCACCTCCGCTTCCGATGACACCGACTCTTCACTTGATGATGCCCATCGAAACAACAACGGGTCTCGTGAGATAGACATGGCCCTTGTGTTCGCCAAATTCTTGAACCCAAAACATATCCTCGGTGAGGATAACAATGGCTCCTCTTCTTCCAACAATTACTTAACACCGGAGAGCGTTGAAACCGAGAATGATACGGCAGTTGTTCAGTCGCAGAACAAGGGTTTGTTGGATCCTGTCATTGTAGAGTCTGACTCTGATGCAGTGGTGGGAAATGAGAATTTTGGAAGGGAGGAATTGAGTTTGGGTGAGATTGACGAGTTGGAGAGGCTTCTGGGTGTGTGTGGCGATGAAGATGGTCTTTGGTGTGATGCTACCTTGCCCTCTTCCGTTACTTGGGAACCACCCGTGAAGGAAATGCAGTTGCAGGAGTTGGAATACTCGATGCCGTTGAATGCGAATGATGAGCAATTATTACCCATCACTTCTGCATCTACGGTGAATTCAACGAGTGACACTTGCTGGAGCACTTGGAGTTCCTTTGATCTTTCAACCATGGAAGTGTTCTCATCAACTCCCTGA 909 0.4961 MFPHTLIGASGLQQMLHHHHHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRGKSSSRHHQNQSSFTSASDDTDSSLDDAHRNNNGSREIDMALVFAKFLNPKHILGEDNNGSSSSNNYLTPESVETENDTAVVQSQNKGLLDPVIVESDSDAVVGNENFGREELSLGEIDELERLLGVCGDEDGLWCDATLPSSVTWEPPVKEMQLQELEYSMPLNANDEQLLPITSASTVNSTSDTCWSTWSSFDLSTMEVFSSTP* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01391 302 Pfam Dof domain, zinc finger 42 96 IPR003851 GO:0003677|GO:0006355
Lapu9g01391 302 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Lapu9g01391 302 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Lapu9g01391 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 170 IPR045174 GO:0003700|GO:0006355
Lapu9g01391 302 MobiDBLite consensus disorder prediction 86 129 - -
Lapu9g01391 302 MobiDBLite consensus disorder prediction 103 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01391 Lapu-Chr9 28171356 28172657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01391 34 294 C2C2-Dof Transcription Factor Family AT3G52440 39.405 2.40e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu9g01391 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01391 - - vra:106778892 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01391 9 28171356 28172657 Lapu9g01391 9 28171356 28172657 ECH