Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01324 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTGAGAAACGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACTCCATCAGCACCATCACCTGCATCAGCACCAACAAAGAAGCTTCCTGATCTCACAACGCCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCATCAAGGCCAAGACCTTAACTTGGCATATCCACCAGCTGAGGACTACAGCACTGTGTCTAAGTTCATCGAGGTTCCTTACAACACGAAATTAGACAAGGGAGGTCTTCAAAACGCCACCTCCTCATCAACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAAACTGGGATTGCTTCCTCAAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCGTTGCAAGACTTTAAGCCACCGCCTGGCCTTAACTTCAGTCTAGAGGGGTTTGAAAATGGTTACGGGGGTCTTCACGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAACCACCAACGAGTTTGATCAGCAGAATAGAAGTCAAGGGGATTCAGCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 837 0.4803 MDTAQWAQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSPASAPTKKLPDLTTPNFPQSASQDPKIHQGQDLNLAYPPAEDYSTVSKFIEVPYNTKLDKGGLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLQDFKPPPGLNFSLEGFENGYGGLHGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSAGYWNGMLGGGSW* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01324 278 MobiDBLite consensus disorder prediction 86 125 - -
Lapu9g01324 278 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Lapu9g01324 278 MobiDBLite consensus disorder prediction 252 278 - -
Lapu9g01324 278 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Lapu9g01324 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 168 IPR045174 GO:0003700|GO:0006355
Lapu9g01324 278 MobiDBLite consensus disorder prediction 1 32 - -
Lapu9g01324 278 MobiDBLite consensus disorder prediction 252 266 - -
Lapu9g01324 278 MobiDBLite consensus disorder prediction 78 125 - -
Lapu9g01324 278 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01324 Lapu-Chr9 27336042 27338166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01324 24 278 C2C2-Dof Transcription Factor Family AT3G61850 44.286 1.54e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu9g01324 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01324 - - gmx:778114 487.648