Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00695 ATGCTCGAAAATAAGGACCCCGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTCCTGGAGAACCTGAACCTCCGCCCATTGCCGCCGCCGAAACCGCCTCGCCGCCGCCGCCTATGGATGTTGACAGAGACGCAGAAGAAGAAGAAGAAGATGATGACGACTACGTTGCTGACTCAGAGGCTGAAGATGATGAGAACAAACACAAGGATCCTCCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCCAACTGCTGCAGACTCCAAGAAGACCCCTGAGGGTATTCAGAACCCAACCACACCTTCCATAGACGAAGATTCTGCAAAGTCAAAAACCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACAGTTGCTGCTACTACAACCAACTCACAGGAGAACAACAACAACAATAAAACGCTCAAAAAACCCGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCGGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGGAACTCATATTTTGAAGCCCAATGGCAGAGTCCTCAGCTTTGGTTTAGACCCTCCTATTTGTGATTCCATGGCAACAGTCCTCAACCTCGCAGAGAAGAAAACAAGAAACGGGTTTCACTCCATTGAGGATCAAAGAAACAAAGATGATGACTGCTCAAGTGCATCATCCATTACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCAAACAACAACGGTTTCATACATCATCATCACCATGTTCCGTGCATCTCCACTGTTCCTTGGGCTTATCCTTGGAACTCTGGGGTTCCCTCAGCACCTGCTATGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACTCACAGCACCATGCTGCTCCTGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCTACTCTTGGGAAACACTCCAGGGACGATGACGTGGCGAAGCAAGAGCATGTGCACGAGGAACCGTCGAGGCAGAGAAACGGGTCTGTGTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCTAAGAGTTCTATATGGGCAACGTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAGGGGTTCCAATCCAAGAAAGATGAGAAAGACCGTGTTGTTGAAGCCTCTCCTGTCTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1455 0.49 MLENKDPAIRLFGQKIAFPGEPEPPPIAAAETASPPPPMDVDRDAEEEEEDDDDYVADSEAEDDENKHKDPPEEVSEKTKEADLPPTAADSKKTPEGIQNPTTPSIDEDSAKSKTNKSENDQTDPTTTVAATTTNSQENNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHILKPNGRVLSFGLDPPICDSMATVLNLAEKKTRNGFHSIEDQRNKDDDCSSASSITVSNEESGKSTSQESLVPNNNGFIHHHHHVPCISTVPWAYPWNSGVPSAPAMCPPGFPMSFYPHAFWNIPWFPTHSQHHAAPAPRSPGSGPNSPTLGKHSRDDDVAKQEHVHEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKDEKDRVVEASPVLRANPAALSRSLNFHENS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00695 484 MobiDBLite consensus disorder prediction 385 405 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 61 87 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 93 109 - -
Lapu9g00695 484 Pfam Dof domain, zinc finger 150 207 IPR003851 GO:0003677|GO:0006355
Lapu9g00695 484 MobiDBLite consensus disorder prediction 282 308 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 1 150 - -
Lapu9g00695 484 PANTHER CYCLIC DOF FACTOR 2 4 484 IPR045174 GO:0003700|GO:0006355
Lapu9g00695 484 MobiDBLite consensus disorder prediction 42 60 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 19 33 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 269 308 - -
Lapu9g00695 484 ProSitePatterns Zinc finger Dof-type signature. 155 191 IPR003851 GO:0003677|GO:0006355
Lapu9g00695 484 ProSiteProfiles Zinc finger Dof-type profile. 153 207 IPR003851 GO:0003677|GO:0006355
Lapu9g00695 484 MobiDBLite consensus disorder prediction 365 416 - -
Lapu9g00695 484 MobiDBLite consensus disorder prediction 120 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00695 Lapu-Chr9 8594068 8597726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00695 1 482 C2C2-Dof Transcription Factor Family AT3G47500 47.904 3.24e-121 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu9g00695 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00695 - - gsj:114409713 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01020 3 10930804 10934368 Lapu9g00695 9 8594068 8597726 ECH
Lapu9g00695 9 8594068 8597726 Lapu9g00695 9 8594068 8597726 ECH