Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00537 ATGGCTTGTTCCATAGTAATTGGTGCATATGAAGAGAGCTTGTATCCTAGGACAATTTCTAGTGGCAACTATCATGAGGCAATACAAAGGTTGCAGTCATTTAAGGTCTCTTTAACCACACGTGATTCCATTGCTTCAGCACCATCTTCCTTATTACCCTTCTCAAGCCCTCCTGCTCCTGCCCCTGCCCCTGCTCCTTCTCCTCTCTCACTTCAGGGAGTGAACTATCCACGTGTGTACCATGTCACATCTTATGGTGCAGATCCAACGGGTAGTTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGCAGATGCAGCCAAAGGTCCCGGTGAAGGATATTTGATGCAAGGAATAAAAAACCTTGGAGGTTCCCAGATTAATCTTGAGGGTGGAAATTACTTGATCAGCCAGCCACTGCGGTTGCCGGTGGCCGGAGTGGGGAACCTTATGATACATGGGGGGATGATAAGAGCCTCGGATGGTTTTCCAGCAGATGGCTATATCATTGATTTGTCACCCTCTTCCAGTGAAGGAAACATAAATAGTTCTTCAAAATCCTACAATTTTGAGTACATAACTCTCAAGGACCTCTTATTGGACTCAAACTTTAGGGGAGGAGGCATTTCAGTCATAAACTCACTTCGGATTAGCATAGACAATTGTTACATCACACATTTCACCACCAATGGAATTTCAGTCCTAAGTGGCCATGAAACTTACATCAGGAACACTTTCCTTGGTCAGCATATAACTGCTGGTGGGGACAAAAATGAGAGAGACTTCTCAGGCACAGGAATAAACCTCCAGGGTAATGACAATGCCGTCACAGATGTTGTAATTTACTCTGCTGCTATAGGAATAATGGTTACAGGTCAAGCCAATGCTTTTTCAGGCGTACATTGTTACAATAAGGCCACTGGCTTTGGAGGCACAGGAATTTATTTGAAACTACCTGGTTTGACACAAACTAGGATTGTGAATTCTTACATGGATTACACTAATATTGTGGTTGAAGACCCAGTTCAATTCCATGTCTCTAGTTGTTTCTTCCTTGGTGATGCCAACATTGTCCTAAAGTCTAAGAATGGGGTTATAAATGGAGTTGATATTGTTGATAACATGTTCTCGGGTTCAAATCACGGGGTTGAAATTGTTCAGCTGGACCAATCCAATAATCCTTTCCATCAAATTGAACAAGTTATTGTTGACAGAAATAATGCAAGAGGGATGAAGTTAAAGGCCACAATTGCAAAAAGGTCCATGCAAGGGAATGGAACCTCATGGACGCTTGATTTTAACAATGTTTTGCTTTTTCCTAACCTTATAAAACATGTTCAGTACTCTCTAAGCTCCCCTGACAGTACCTTCCCCAATCATATTTTAAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAAGAAAGCAGTGTCTGCCAGTGTTTTTGTTACGGTGGATCAAAGTGAGGAAAAATGA 1479 0.4226 MACSIVIGAYEESLYPRTISSGNYHEAIQRLQSFKVSLTTRDSIASAPSSLLPFSSPPAPAPAPAPSPLSLQGVNYPRVYHVTSYGADPTGSSDSTEALLAAIADAAKGPGEGYLMQGIKNLGGSQINLEGGNYLISQPLRLPVAGVGNLMIHGGMIRASDGFPADGYIIDLSPSSSEGNINSSSKSYNFEYITLKDLLLDSNFRGGGISVINSLRISIDNCYITHFTTNGISVLSGHETYIRNTFLGQHITAGGDKNERDFSGTGINLQGNDNAVTDVVIYSAAIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVVEDPVQFHVSSCFFLGDANIVLKSKNGVINGVDIVDNMFSGSNHGVEIVQLDQSNNPFHQIEQVIVDRNNARGMKLKATIAKRSMQGNGTSWTLDFNNVLLFPNLIKHVQYSLSSPDSTFPNHILRNVSENRVVIETKKAVSASVFVTVDQSEEK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00537 492 Gene3D - 79 491 IPR012334 -
Lapu9g00537 492 PANTHER POLYGALACTURONASE QRT3 21 490 IPR039279 GO:0004650
Lapu9g00537 492 SMART pbh1 214 236 IPR006626 -
Lapu9g00537 492 SMART pbh1 361 387 IPR006626 -
Lapu9g00537 492 SMART pbh1 271 292 IPR006626 -
Lapu9g00537 492 Pfam Pectate lyase superfamily protein 82 308 IPR024535 -
Lapu9g00537 492 FunFam Polygalacturonase QRT3 82 483 - -
Lapu9g00537 492 SUPERFAMILY Pectin lyase-like 78 465 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00537 Lapu-Chr9 6143048 6145165 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00537 9 6143048 6145165 Lapu9g00537 9 6143048 6145165 ECH