Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00201 ATGCAGGATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGGCCGCACCACCACAACCACCACCAGCCGCTAAAGTGCCCTCGCTGTGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCACAGCCCCGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGGGTCCTCCGCAATGTCCCCGTCGGCGGTGGTTGCCGTAAATCGAAACGCTCCAACAAGCCCAAAACCGCCGCCGTCAACACGAACAGCAGCAGCAACAACAACCCTTCCTCTTCGTCGCAGATCGCTCCGGCCACCGCGTCAACTACGCCGTCGGCTGCGGAGCTAGAGCGCAACTCGAACTCCCACTCCAGCAGCGAAAGCTCTACCCTAACCGTCGCCGCCACGGAGGCTATGTCGGCGCCGACATCAAACACCGTGTCGAACAACGCTTTGTTTCTCGACAACGTTCGCGAGTCGAAGTTGTTCGCTAACGCTAATAACCCGTCTTTGGAGAGCGGTGGCGTGTTCTCTGAGATAGGGAGCTTGACCAGCCTCGTTACTTCGAATAACGAGGCATTGGGGTTTGGATTTGGGAACTGTAGTAATAGTAACAGCAACATCCTGGATGCGACGCCGTTTCGGTTCGGTGTTAGTCATCCGCAGGGGAATGATCAGGCGCAAGTGGCGCCTGGTGGAGACCACGATCAGTGGCAGCAACAGCAGAACCATCAGGAATTTGGTACGGCGTCGTTTCTCGATCTCACGGCGCCGCTTGAGTTTTCGTCGTTGCAGCACAACAAGACAGGGCATCATGGAGGATTTGGATCGTTGGATTGGCAACCCGGTGCGGATCAAGGTTTGTTTGATCTCCCCAACACCGTGGATCAACAGTACTGGACCCAGACTCATTGGTGTGATCAAGATAATCCTGCTATCTTTCAGCTTCCTTGA 960 0.5542 MQDIHSICGGDRRLRPHHHNHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTAAVNTNSSSNNNPSSSSQIAPATASTTPSAAELERNSNSHSSSESSTLTVAATEAMSAPTSNTVSNNALFLDNVRESKLFANANNPSLESGGVFSEIGSLTSLVTSNNEALGFGFGNCSNSNSNILDATPFRFGVSHPQGNDQAQVAPGGDHDQWQQQQNHQEFGTASFLDLTAPLEFSSLQHNKTGHHGGFGSLDWQPGADQGLFDLPNTVDQQYWTQTHWCDQDNPAIFQLP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00201 319 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Lapu9g00201 319 MobiDBLite consensus disorder prediction 83 135 - -
Lapu9g00201 319 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Lapu9g00201 319 MobiDBLite consensus disorder prediction 69 135 - -
Lapu9g00201 319 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Lapu9g00201 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 228 IPR045174 GO:0003700|GO:0006355
Lapu9g00201 319 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00201 Lapu-Chr9 1914580 1916791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00201 11 319 C2C2-Dof Transcription Factor Family AT5G60850 40.244 4.24e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu9g00201 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00201 - - vun:114196340 498.049