Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01041 ATGGTTACCACTGCCAAATCTTCCAATCATCACTCCTCGTCTAGTGCTCCGTCGCAGGTCCAGCCTCCCGATGCCAACAGCCCCAAGTTCCCGCGAAAAAACCTTCCCTCGCCGTGGGCTCAAGTGGTTCGCGGCGGAGAGCCGGAATCGGCTGCTGGCATTCACCAATCGCCGCCATCAACGTCATCCTCGTCGTCATCACTGATTGCCGACCAAGTCCCGTCATCGGAGTGTTCTCCGAAGGTCATTCCGGCCTCGCCGCCGGTGGACAATTCCAACACGGTTGGTGTTGCAGACACCTCTGAGGGTGCTGAGGACAATGCTGATCGTTCCAAGAAACCCGTTTGGAATAAGCCCTCAAACGGCGTCGTGCTGGAGACAGGCCCTGTAATGGGCGCCGAATCGTGGCCCGCTTTGTCTGCATCCACCAAAGTTTCTGCTAAATTGCCTGCTGAATCATCCTCCAAGACCGTTGCTGATGGATCACTCTCAACTTCTCAGGGGCCAATGATTTCACAGTCTCCTCAGAAACAGGCTACTACTACTAATGCAAAACCTAATTCTGCAACAAATTATAATGTGCCTGGTAGACAAAGATCGATGAAGCGGGTAGGTGGTAGTGGCATTGTGTCTGGTCCTTCCCACAGCAACTTCTCCAATCCACCTCCACCACCGCCACCACCACCTTTTCCTGTATACCACCTCCCACCAGTTAGCTATGGTATGGTACCGGTGGTACCTGAGCATTCTCCAAGAGACCATTACAGGAACAGTAACTGGGATCCAAGACCAATGGTGGGGGGTTTTGTGCCTGGGATGAATGAATATCGTGGTGCCTCACACAGGGGTTATTTTGGCCCTCATCCACGAGGAGATGGTTCGTATCATAATAGTTATGGTAGCAGGCATGATCAAGATCGCCGAAATTATGGGAATACTAGAGACACTTTTGTACCTCAACCAAGGATGCCTCCTAGAGGATTACTGAGGCACCCACCTCCTAGCACTGCTGCTTTTGTGGGCCCTCAGTCCATTGGACCTTTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCTTTAACAATGGAACAGTTTACGGGTATGCCTTACTTCACGCCCAGCCCTCCTCCTACAACATTGTTTTCTGCCGCGGAATCTCCTCTTTCTGATATGATAGTCCGCCAAATTGAATATTACTTTAGTGATGCTAATTTGGTGAGAGATGAGTTTTTAAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAGAAGTCTTACAACCAACATTCAGTTGATATTGGATTCTATGAGAACTTCCACAATTGTGGAAGTGCTGGGTGACAAGTTGAGAAGACATAATGAGTGGATGAGATGGGTGTCCTCTGCTAAAACACGGTCTGGATCTACTTCTACTTCATCGTCTCCCCGTGGATCAAGATACAATAACTTGACAGCTAATTTTCAAGCTATAACCCTGGAAGAAACAACTGTCCTGTAG 1536 0.4896 MVTTAKSSNHHSSSSAPSQVQPPDANSPKFPRKNLPSPWAQVVRGGEPESAAGIHQSPPSTSSSSSSLIADQVPSSECSPKVIPASPPVDNSNTVGVADTSEGAEDNADRSKKPVWNKPSNGVVLETGPVMGAESWPALSASTKVSAKLPAESSSKTVADGSLSTSQGPMISQSPQKQATTTNAKPNSATNYNVPGRQRSMKRVGGSGIVSGPSHSNFSNPPPPPPPPPFPVYHLPPVSYGMVPVVPEHSPRDHYRNSNWDPRPMVGGFVPGMNEYRGASHRGYFGPHPRGDGSYHNSYGSRHDQDRRNYGNTRDTFVPQPRMPPRGLLRHPPPSTAAFVGPQSIGPFANPMGFSEFYYYQPLTMEQFTGMPYFTPSPPPTTLFSAAESPLSDMIVRQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVRSLTTNIQLILDSMRTSTIVEVLGDKLRRHNEWMRWVSSAKTRSGSTSTSSSPRGSRYNNLTANFQAITLEETTVL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01041 511 PANTHER LUPUS LA PROTEIN-RELATED 133 473 IPR045180 -
Lapu8g01041 511 FunFam la-related protein 1B isoform X2 381 471 - -
Lapu8g01041 511 CDD LAM 393 464 - -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 86 100 - -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 297 311 - -
Lapu8g01041 511 Pfam La domain 395 450 IPR006630 -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 1 225 - -
Lapu8g01041 511 SMART la 389 465 IPR006630 -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 287 325 - -
Lapu8g01041 511 SUPERFAMILY "Winged helix" DNA-binding domain 387 473 IPR036390 -
Lapu8g01041 511 ProSiteProfiles La-type HTH domain profile. 385 474 IPR006630 -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 1 25 - -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 139 197 - -
Lapu8g01041 511 MobiDBLite consensus disorder prediction 54 74 - -
Lapu8g01041 511 Gene3D - 384 475 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01041 Lapu-Chr8 28472297 28477438 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g01041 8 28472297 28477438 Lapu8g01041 8 28472297 28477438 ECH
Lapu8g01041 8 28472297 28477438 Lapu9g02316 9 37754978 37760177 PCT