Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01011 ATGGGAGTCCCGGCCTTCTACAGGTGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAACCTGTAGTCATCGACGGCATTCAAATTCCGGTCGATACAAGCAAGGCGAACCCTAACAACATCGAATACGATAACCTCTACCTCGATATGAATGGTATCATTCATCCCTGCTTCCACCCCGAAGATAGGCCTTCTCCCACCTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGATAGGCTGTTCGTTATGGTGCGGCCGCGGAAGCTGCTTTACATGGCTATTGATGGTGTTGCGCCGAGGGCCAAAATGAACCAGCAACGATCTAGGCGGTTTAGAGCTGCGAAAGATGCAGCTGACGCAGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGGAGAATCACAGACTTTTGATTCAAATGTTATTACACCTGGAACTGAATTTATGGCCGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGGTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGAGAGCATAAAATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATATGGCAGCCAACTGTGAAGGAAAGGCAAAAAGGAAGGAAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGACTAAAAAGCCATACCAGTTCCTGAATATTTGGACTCTAAGAGAGTATCTGGAGTATGAGATGAGAATACCTAATCCTCCTTTCGAGTTTGACTTTGAATGCATTGTAGATGATTTTATCTTCATATGCTTTTTTGTCGGCAATGATTTTCTTCCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATCAACTTGCTGTTAGCTGTATACAAGAAGGAATTTAGGGAACTTGGTGGTTATTTAACCAATGGTAGCAAGATAAATTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGGTCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACAGAAAGAATAAAGCGCGAAAAGGCACAAGCAAGAAGGGGAGATGATACCGAGCCTCAATTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTACGGCTCCAACACCTTCACCATTTCAACAATCTGGGCATTATAATTCTCAAGTGTCCTCATCAGTTAGAAAATATGATAAAGAAGCCTCTGAGAGGCCTCAGAAAGTTGCAAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCGGAGAGTAGTGTTGAAATAGAAGCTCAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTCCGTGAGAAATCTGATGTATTCAATTCACCAAATGCAGAAGAGGACAAGGTTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAGTACACTGAAGGCCTGTGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCATATCACTATGCTCCCTTTGCGTCTGATCTCAAGGACCTTGGTGGACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCCTATAGGAAACTTATGACAGAACCAAGCTCACCAATCATTGATTTTTATCCTATTGACTTTGAAGTTGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTACCTTTTATTGATGAAGTCCGTCTTCTTGCAGAAGTTCAGAAGATTGAAATTTTTTTAACTCCTGAGGAAAAGCGAAGGAATGCTATAATGTTCGACTTGCTCTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAAACATGTCAAACAGTGAACGGGCTGTGGTCAAGGAAAAAATCGATCCCAAAGAGAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCTTTATGCGGTGGAGAACCTTGCCCTCCTGTCTTTAGGTCTCCTGTTTCAAGCATGGAAGATATTATGGACAATCAAGTTATATGTGCAATATATAGACTCCCAGATGCTCATAAACACATTACCCGACCACCACAAGGAGTTAAATTTCCGAAAAAGACTGTTACCGTTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCGGGTAGGAGATACCATGCTGAAAATGGGAGGAAAAACCCTTCAGGATATTCGTCTGGTCGGGAGCTTGGAGATGGTGCACATAGACTCATCGTCAATTCCTTACAGATGAAGGTTGACTCCAATGGCTACCGTCACCCACATAATGGACCTCCTATATCTTATCCTGCATCAATGGGTCATCGACCACCAGTGTCTTCCTATGGTTATGAATCACACCCAGGATACGTTGCAATGCCACCTCCTGTTTCTGCTCCCGCACTCCAAGGCATACCCCACCACTTTGCACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGTTATAATCAACAGTACCTGCCTCCCCCGGTAGCATACAACCCTCATCAGCCATCAAATTCTTACGAAGGAAATGACTATCAACACCCTAGATCACATCATTATGAAAGAAATCACCATCAGGGTAGTGGGGGTAGTTCAAGGCATGGATATCAATCGTCAGGAATTAATCAGAATGCCAGGTTTATGAATAACACACAAGGTGCATATGCGAGTCACCATCATGAAGTTAGTCACCACAGCCAAAACTTCCAACCATCTAGAACCCATCAGAATTGGACTCCACGAAACAACCCCAGTGGAAACAGGGAATTTGGTCATCATTCGTCCAATCAATTTTCTTCATTAGACAGACGAGGAAGCAGGAATCCAATGCCACCACCTGGTTACGATCGCAAATAA 3240 0.4315 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGIQIPVDTSKANPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKGESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKEGEFDEKGEAIVTKKPYQFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRELGGYLTNGSKINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDTEPQFQPESLVAVSRFHGSRLATAPTPSPFQQSGHYNSQVSSSVRKYDKEASERPQKVARLSSGATVAAAIVEAESSVEIEAQDNKDELKTKLKEILREKSDVFNSPNAEEDKVKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKDLGGLDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRKLMTEPSSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIEIFLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMSNSERAVVKEKIDPKERDTCSGGMNGYISLCGGEPCPPVFRSPVSSMEDIMDNQVICAIYRLPDAHKHITRPPQGVKFPKKTVTVGDLKPEPVLWHEDSGRRYHAENGRKNPSGYSSGRELGDGAHRLIVNSLQMKVDSNGYRHPHNGPPISYPASMGHRPPVSSYGYESHPGYVAMPPPVSAPALQGIPHHFAPYNAVPTAQQYGYNQQYLPPPVAYNPHQPSNSYEGNDYQHPRSHHYERNHHQGSGGSSRHGYQSSGINQNARFMNNTQGAYASHHHEVSHHSQNFQPSRTHQNWTPRNNPSGNREFGHHSSNQFSSLDRRGSRNPMPPPGYDRK* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 1028 1065 - -
Lapu8g01011 1079 Gene3D - 1 137 - -
Lapu8g01011 1079 Gene3D - 147 391 - -
Lapu8g01011 1079 SUPERFAMILY Retrovirus zinc finger-like domains 258 284 IPR036875 GO:0003676|GO:0008270
Lapu8g01011 1079 FunFam 5'-3' exoribonuclease 149 372 - -
Lapu8g01011 1079 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 973 989 - -
Lapu8g01011 1079 FunFam 5'-3' exoribonuclease 1 136 - -
Lapu8g01011 1079 CDD PIN_XRN1-2-like 51 312 - -
Lapu8g01011 1079 PANTHER 5'->3' EXORIBONUCLEASE 1 1029 IPR027073 -
Lapu8g01011 1079 FunFam 5'-3' exoribonuclease 614 714 - -
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 451 489 - -
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 453 474 - -
Lapu8g01011 1079 PIRSF Exonuclease_Xrn2 1 1060 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 951 1001 - -
Lapu8g01011 1079 Pfam Xrn1 helical domain 325 828 IPR041412 -
Lapu8g01011 1079 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Lapu8g01011 1079 Gene3D - 617 714 - -
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 413 432 - -
Lapu8g01011 1079 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Lapu8g01011 1079 Coils Coil 122 142 - -
Lapu8g01011 1079 Coils Coil 508 528 - -
Lapu8g01011 1079 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Lapu8g01011 1079 MobiDBLite consensus disorder prediction 1017 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01011 Lapu-Chr8 28239054 28253294 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g01011 8 28239054 28253294 Lapu8g01011 8 28239054 28253294 ECH