Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01008 ATGATGGCTTCCGTAGAAGAAAAGGTTAAAACTGGAGGAGTTGGAGTTGGAGTTGGAGGGGGAATGGTTGTTGGAGGTCAAACTTTAGCGGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCCGGGGTCAGAAAGACTTTGAATTCCGAGCTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGATTGGAAGTCTTGTGTTTTACTTCCCACAGGGACACAGTGAGCAGGTGGCGGCTTCTACTAGAAGAACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCGTCTCAGTTGCTGTGTCAAGTCCAGAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGAAGCCTTTCCCATATCTGATTTTGGGCTAAAGCACAGCAAACACCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGCGGATTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATTTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGACGAGAAATCGCAGTTGCGAGTTGGTGTAAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCAGTACTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCAGCTCACGCCGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGCCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATTAGGGACTCAGATCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGTTGTGGTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATATTTCCTTCTTTGACTTCAAGTCTAAAACGGCCATTGCAATCTGCATTTTATGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATGAGAGTTCCAGAAAATGGAAGTATGGAGCTCTCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTTAAACCCCAGAGTATTAACAACAATGGAGCATTGTTATCTGCCATGCAACAAGAATCTGCGGCTACAAGAGGTCCCTTGCAAGATATGAAGACCACACTTGCGGCAGAGAACATGCCGCTCAGAAATCTACATACTCAATCTATCCCTGACCAACCTAATCCGTTAAACATGCAATCACTGTTGAAAATTGATCAACCTGAAAAGTTGCATACTCTTGCCAAAATTGAGCTGCCTTCTGGGATAGTTACTGACAAGCCAAAATTAGAACCTGAGGTATTACCTGATCATATTATTGACTACCCTTCCATGGAAGGGTGCAACATTGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAAGCCTAGCAAACCAATTGACGTTCCATAATCAAAACCAGACTCCTCTACTCACTCAATCTAGTCCATGGCCTATGCAACCGCAGCTAGAATCATCCATGCCCCATCCTCAAATGATTGACATGGCTCAAGCTGAAACTGCTATGGTAAATAGCCTGCTTCCTCAGCTGGACATCGATGAATGGATGGCGTATGCTTCCTCCCAACCTTTTGCTGCTCCAAACAGACCAACTGGACCTTTATCCGACTTGCAAGAACATACCTCACTTCAACCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACCATGAAGTGTGGGATCATTATGTCAAGAATTTGAAGTTTTTGTCTCAAACAGACCAGCTAACCTCCATCTGTCAGCCAGGGATGTACGGCCTCAATGGCATGTCAAGTCCAAACAGTCGGAGGGACCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAACCTTGATGTTAGCAACAGTGTAGGTACCACCGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGAGAGAGAGTTTCATAATCCAAATGATTGCATGGTGGGCAACTTGAGCTCAAGCCAGGATGTGCAATCACAGATAACCTCGGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTTAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGTCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACTCATGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTGCAAAAGGCTGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTACGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGCCTGCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTAAATAGTGGAGCTTTACAAGGGATGAATGTTTGA 2805 0.4421 MMASVEEKVKTGGVGVGVGGGMVVGGQTLAAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQIGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEAFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLGTQISVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSAFYENEWGTLLRRPFMRVPENGSMELSNSMPNLYSEHLMKMLFKPQSINNNGALLSAMQQESAATRGPLQDMKTTLAAENMPLRNLHTQSIPDQPNPLNMQSLLKIDQPEKLHTLAKIELPSGIVTDKPKLEPEVLPDHIIDYPSMEGCNIEKVAANPVNQQSLANQLTFHNQNQTPLLTQSSPWPMQPQLESSMPHPQMIDMAQAETAMVNSLLPQLDIDEWMAYASSQPFAAPNRPTGPLSDLQEHTSLQPQVVNPPLPSMNHEVWDHYVKNLKFLSQTDQLTSICQPGMYGLNGMSSPNSRRDLSAESNNQSEICVNLDVSNSVGTTVVDPSTSSTILDEFCTMKEREFHNPNDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01008 934 SUPERFAMILY DNA-binding pseudobarrel domain 143 284 IPR015300 -
Lapu8g01008 934 Gene3D - 825 917 - -
Lapu8g01008 934 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Lapu8g01008 934 FunFam Auxin response factor 153 257 - -
Lapu8g01008 934 Gene3D - 319 391 - -
Lapu8g01008 934 Gene3D - 153 256 IPR015300 -
Lapu8g01008 934 ProSiteProfiles PB1 domain profile. 828 912 IPR000270 GO:0005515
Lapu8g01008 934 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 918 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu8g01008 934 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Lapu8g01008 934 SUPERFAMILY CAD & PB1 domains 830 907 - -
Lapu8g01008 934 SMART B3_2 155 257 IPR003340 GO:0003677
Lapu8g01008 934 FunFam Auxin response factor 824 917 - -
Lapu8g01008 934 FunFam Auxin response factor 319 391 - -
Lapu8g01008 934 Pfam AUX/IAA family 826 915 IPR033389 -
Lapu8g01008 934 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu8g01008 934 CDD B3_DNA 154 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01008 Lapu-Chr8 28177407 28182419 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu8g01008 AUX_IAA 6e-11 CL0072