LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g00992	ATGCTGGCATCAGGCCTGGGAATGAATGAGAGTAGGCAGATGACAATACCTGCTAGAGCGAGTTCCAGAAAGGGGTGTATGAGGGGGAAAGGAGGCCCTGAGAATGCCACTTGCATCTTCAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCCAACCGTGGTGCACGCCTCTGGCTAGGCACATTTGAGACCTCTGTAGAGGCTGCCTTGGCCTATGATTGTGCAGCACGCAAGCTCTACGGACCTGATGCAAGACTCAACCTCCCAGAGATTGCTGCGGCCTTTAATTTCCAGTTTCCCAATCCTCAGATCCCCCGTATGCCACCACCACCACAGCCTCAAAACCCTCAGATTCTCCACCCCTATGATATTTTCAATCTCTATCCCTCTGATTTCATCAACAATAGCACCAACATCATGACCAACCCTGTGATCTCCATTCCCCCTCAGCATGCAATTGCTGATTTTGCGCCTGTCTACACCAGCGACTCTGCCGTTGCAATTCCCTATGAAAACACCACCATCAACCCCATCCCCATGTCGATTTACCCCTCCAGCCCTGTAGAGATCAACGGGGACAACGTTGGTCCTTTTGGGGGGTCATTCAACGACACCCTTGACCCTATGTTTGATGAGTCCATCTGGGCGGAGGCTGCCTTGTCTCTCGATTTCCCTCTCATACCAGATGCTGCTGGACTTTATGGACCTGAGTCCCTGTATGAAGTGGGTCCTTGGGAGTTTCTGCAAACTCCTTGGTGCATGGTTCTGGTCGAACTTAGGGTTCGTGCTTCGTTCGGACTTAGGGTTCGTTCGTTTGGACTTAGGGTTCTTGCCTCTCGTCAGACTTTAGGGTTCTTGCCTCTCGTCGGACTTTAG	897	0.5206	MLASGLGMNESRQMTIPARASSRKGCMRGKGGPENATCIFKGVRQRTWGKWVAEIREPNRGARLWLGTFETSVEAALAYDCAARKLYGPDARLNLPEIAAAFNFQFPNPQIPRMPPPPQPQNPQILHPYDIFNLYPSDFINNSTNIMTNPVISIPPQHAIADFAPVYTSDSAVAIPYENTTINPIPMSIYPSSPVEINGDNVGPFGGSFNDTLDPMFDESIWAEAALSLDFPLIPDAAGLYGPESLYEVGPWEFLQTPWCMVLVELRVRASFGLRVRSFGLRVLASRQTLGFLPLVGL*	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g00992	298	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Lapu8g00992	298	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Lapu8g00992	298	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Lapu8g00992	298	Gene3D	AP2/ERF domain	39	98	IPR036955	GO:0003700\|GO:0006355
	Lapu8g00992	298	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	17	99	-	-
	Lapu8g00992	298	CDD	AP2	38	97	IPR001471	GO:0003700\|GO:0006355
	Lapu8g00992	298	MobiDBLite	consensus disorder prediction	1	29	-	-
	Lapu8g00992	298	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Lapu8g00992	298	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Lapu8g00992	298	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Lapu8g00992	298	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g00992	Lapu-Chr8	28011459	28013012	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Lapu8g00992		AP2	1.4e-13	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu8g00992	8	28011459	28013012	Lapu8g00992	8	28011459	28013012	ECH
	Lapu8g00992	8	28011459	28013012	Lapu9g02258	9	37152585	37153352	PCT