Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00985 ATGTATTCGAACCAAGCGTTTTCTTCAGGATCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACCGTTGGAGGACAAAATGAGTTGAAGTTCATCACATCCATGAGGGATACAATGACTATGCAACATATTGATGGGCATTCAAATGCGGTCCCCAGAGCTGATCAAGACTCTTTTGCCAATGCTGGAGATTCCCATTCCCATGTTATTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCCTCACTAATGACTGCTTCTGTCCCAAATTTAAAGGGCTCTTCATCTCTTAAAGATGATGAAGCCAGCCTACAGAGGGAATTGAGAAATGCTGAGTGCATGACATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCGTCAATGTACCTCAGTGAAGGCCAGAGCGATGGATCACTAGGCTTTTCCAGCAGTGTCTTGAACTCACAATATCTCAAGGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAAAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGATCCAAAGATTCTGATGGAAAATCAACCAGCCAATCTGGGCAGATATCTTCATGCCCCAATAGTTCTGCTGCAAACTCTTCATGTGAGCTATCACCTGCAGAACGACAGAATTTATTGGACAAGAAGACAAAACTCTTGTCTATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGTTTGTGGAGCAGCTGAACCATACACCGCACTTGCATTGCGCACAATCTCGCGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAGAGGAGTCTTGGAGAGCAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGAGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCGAAGGATTCAGAGAAAATTATGCTGGCTCGGCAAACAGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTCTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGACTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTGAAAGTTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACATAATAAATGTTGATGATAGCGTTATTCAGCATCATGGGTTGAAGTTTGATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGCAGTGATGATGGAGAAAATGCCATGGATCATAGAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACAGGAACAACAGCAATAGTCCTTATTATGGGGAAGGCTGCATAATAGCTCCTACTCCTGCCACATATGATTTATCACAGTTAGGTAACATTGGTGTGGGTGGACAAGTGTCACTTGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATTTGCTAGATTACCATTTCACGGACCAAGAAAAGCAACAAAACAAGTTTGGCAATCCTCATCTATTACACGAGTTTGTTGTGTGA 1914 0.4394 MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFITSMRDTMTMQHIDGHSNAVPRADQDSFANAGDSHSHVIPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGSSSLKDDEASLQRELRNAECMTSLASCGFHKREGLLYTPQHPSMYLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAVCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLSSENTLKVPRDDVQSSDSKREESQDNIINVDDSVIQHHGLKFDHASELDRGIQSSDDGENAMDHRIGKLQGDQRFNRNNSNSPYYGEGCIIAPTPATYDLSQLGNIGVGGQVSLALELRNCESEGFGVSNDDMHRRRKKTLASSPEADLLDYHFTDQEKQQNKFGNPHLLHEFVV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00985 637 Coils Coil 137 157 - -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 472 489 - -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 241 267 - -
Lapu8g00985 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Lapu8g00985 637 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 507 533 - -
Lapu8g00985 637 Coils Coil 203 223 - -
Lapu8g00985 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Lapu8g00985 637 SMART prehox3 191 341 IPR006563 -
Lapu8g00985 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Lapu8g00985 637 Pfam Associated with HOX 197 340 IPR006563 -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 455 490 - -
Lapu8g00985 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Lapu8g00985 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 477 - -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 507 542 - -
Lapu8g00985 637 Gene3D - 379 456 - -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 456 471 - -
Lapu8g00985 637 FunFam BEL1-like homeodomain protein 4 385 447 - -
Lapu8g00985 637 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00985 Lapu-Chr8 27955797 27960366 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu8g00985 POX 7.5e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00985 8 27955797 27960366 Lapu8g00985 8 27955797 27960366 ECH