Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00983 ATGAGCGGTGCTGCATTCCTCTACGGTTCGCTTATTCATCCACCGTCGTCACCTTTGATTCAACAACAACGCTATCATTATTTATCACCACCAATCCCAATTCGCCCCCTATGCATATCCCCTCTCACCACCGCAATTGTTTCCACCACCTCCGTTCTCCAACGCGATTCCGCAGTTGAACTCGCGTCGGAGTCATCATCCTCTGTTGACTCAAACGACGCCGTTTCACCGCAGAATGAAACGGTTCAGTTGGAGACAGAGCCGCACACCCACGAAACAGTTCCGCTGCCGCTCTCGTCCGAAGATAAAGGAGCGAGACTTCGAAAGAAGAAAGAAGACGACGTCGTTTCGGATAACCGCTTCAAGCTCCGCAACGGAAGAGAAGTTTTTGCGGAAAAAGCGTATCTCGTAGGCGTTGAGCGCAAGAACGATGTTCAGGATTTTGGAATCGAAGAGTCTCTCAGCGAATTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGTTCTACTTACCAGAAGCTCACTTCTCCAAACCCTAGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGCATTGGATGTTGAAACTGTTATCTTTGACGATGAACTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGACTTTTGGCGGAGATGTGAGAGTTTGCGATCGAACTGCTCTCATCCTTGATATATTTAATCAACGAGCAGCAACACATGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCGGGAGGAAAGGTGAAGGGAATGGGTGAAAAGCAAATAGAAGTGGACAAACGTATTCTGCGTAATCAAATTGGTATTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACATCGGAAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCAGTGGTATCTTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAACCGACTAACTGGAGCAGATGTTCTTGCAGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGAAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGATACTGTTGGTTTTATTCAGAAGCTACCTACCACTCTAGTTGCTGCCTTCAGAGCTACACTGGAGGAGATATCGGAGTCATCACTGATGGTGCATGTAGTTGATATAAGTCATCCCCTGGCTGAGCAACAAATAAATGCAGTCGACAAAGTCTTGTCAGAACTAGATGTATCATCAATTCCAAAATTGATGGTCTGGAACAAGGTTGATAAAGTTAGTGATCCCCATAAACTCAGGCTGGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGTGATGGTTTACAAGAATTTTGTAATGCTGTTCAAGAGAGGCTAAAGGACTCCATGGTTTGGGTTGAAGCTTTGGTTCCATTTGAAAATGGGGACCTTCTCAGTACCATACACCAGGTTGGAATGGTTGAGAAAATTGAATATGCTGAGCAAGGGACATATATCAAGGCACACGTGCCCCTGCGTTTTGCAAGAATGCTCACACCCATGAGGCAACTGTGCGTATCGCGATCTTAA 1656 0.4463 MSGAAFLYGSLIHPPSSPLIQQQRYHYLSPPIPIRPLCISPLTTAIVSTTSVLQRDSAVELASESSSSVDSNDAVSPQNETVQLETEPHTHETVPLPLSSEDKGARLRKKKEDDVVSDNRFKLRNGREVFAEKAYLVGVERKNDVQDFGIEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALDVETVIFDDELSAGQLRNLEKTFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVDKVLSELDVSSIPKLMVWNKVDKVSDPHKLRLEAEKRDDVVCISALSGDGLQEFCNAVQERLKDSMVWVEALVPFENGDLLSTIHQVGMVEKIEYAEQGTYIKAHVPLRFARMLTPMRQLCVSRS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00983 551 Hamap GTPase HflX [hflX]. 154 517 IPR016496 GO:0005525
Lapu8g00983 551 Pfam HflX C-terminal domain 458 526 IPR045498 -
Lapu8g00983 551 CDD HflX 285 488 IPR030394 GO:0005525
Lapu8g00983 551 MobiDBLite consensus disorder prediction 62 84 - -
Lapu8g00983 551 NCBIfam small GTP-binding protein domain 327 482 IPR005225 GO:0005525
Lapu8g00983 551 PANTHER GTP-BINDING PROTEIN HFLX 87 535 IPR016496 GO:0005525
Lapu8g00983 551 MobiDBLite consensus disorder prediction 62 111 - -
Lapu8g00983 551 Pfam GTP-binding GTPase N-terminal 151 240 IPR025121 -
Lapu8g00983 551 Coils Coil 299 319 - -
Lapu8g00983 551 NCBIfam GTPase HflX 133 488 IPR016496 GO:0005525
Lapu8g00983 551 FunFam Predicted protein 145 267 - -
Lapu8g00983 551 Gene3D - 325 493 IPR027417 -
Lapu8g00983 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 498 IPR027417 -
Lapu8g00983 551 Gene3D - 143 243 IPR042108 -
Lapu8g00983 551 Gene3D - 244 311 - -
Lapu8g00983 551 FunFam GTPase HflX 325 494 - -
Lapu8g00983 551 Pfam GTP-binding GTPase Middle Region 243 320 IPR032305 -
Lapu8g00983 551 Pfam 50S ribosome-binding GTPase 328 446 IPR006073 GO:0005525
Lapu8g00983 551 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 326 492 IPR030394 GO:0005525
Lapu8g00983 551 PRINTS GTP1/OBG GTP-binding protein family signature 395 413 IPR006073 GO:0005525
Lapu8g00983 551 PRINTS GTP1/OBG GTP-binding protein family signature 328 348 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00983 Lapu-Chr8 27934713 27941217 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00983 8 27934713 27941217 Lapu8g00983 8 27934713 27941217 ECH