Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00914 ATGTTTAAAGGTGAGTTATTTTTTATACAGAAAATTCCAGATGGATTTGTGTGTCGTATGGAAGGAAGGACGTATGGGTCATTTTCATTGACTGGTCCCAGTGGAAATGTATGGACTGTGCAATTACTTAAGCAAGACAATGATCTATTCTTCCATCATGGATGGTCTGCATTTGTGGTGGATCATCAATTAGAATGTGGTGACCTTTTGGTTTTCAGATACGACGGTCAGTTGCATTTTACCGTCCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGTCGCGTTTATTTCGGAATGCAGTCAAAGTTCGAGTGACTTTTTGGCAATTATAGGACAGAAAAGAGATCTAAAGGAGAGTTCTTTGGATATTGCATTTGATGGTGTTTCAAAGAAAACGAGAGGTTGTAAATATGAGGACCAGGAACTTGAGCCAAGTTTCGTTGGTAAAGAATTATTGCAGTACGAGGTAGTAAGACCTATTAGAATGTTCAGAGAAACTGAAGAAACCTCTAAAGCATGTTTGGCTAATGATGCCCCTGTACCTTTTCACGTGGACAATAGAAACGAAGAGGCTGCCATCCTATATAGAAGTGGAAAGGAAGATGGTCGTTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCATTTACGTCCAATTTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCAATGGCACACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATCTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATTAAGGTTGGAGATATCTGTATTTTTGAGCTTGTGCATGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGGCTAGACTGCCAGGTTGGGAGATTGGCCATTGGTAAGCCTAGTGCAGGACATGCTGGAACTCCCAGATATATGCCAATGAATGCTAAAGTCAACTCAAAGTGCATAAGAAAAGTTGAGCAATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCTAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAAGCTGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGGAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGAGACACGTGCATTTTTGAACTCGTTACTCAATGTGAGATGCAGGCACTTCCGAAGACATTTTCAGATAACTTAAAGAAGAAGCTGCCTGAAAATGTGATCCTTAAGGGTCCTAGTGGTGTTGCGTGGAATGTAGCGATGATTACTAGAGATGATACCTTGTACCTTGCATATGGATGGGAACAGTTTGTGAAAGCTCACTGTTTGAAGGAGAGTGATTTCCTGGTCTTTAAGTATAATGGTGAATCTCAGTTTGATGTTTTAGTATTTGATGGGGGGAGTTTGTGTGAGAAGGCCAGTTCTTATTTTGTTCGAAAACGTGGGCACACCCACACCGAAGCAGAACATGTGGGTGGAAGTCTCGACAAGAAAAAGGACACACGAGAAGATTCTGTGGAAGAAGGTGACATCCCTTTAAAAGCTGGTGTGGATTGTGCTTCGCCTGAGAAATCTGTGCATGCTAATGGTACGAAGGAGCCAATTAATGTACCTTTTGAAACTCCTACTCCTAGTGAAGAGGCTTTCAATGCAGATGTTGAATCTGCTGGTGCTGAGCAAGTTACATCTGTTGGAGTCACTCTGTCAGCTGTTCCCACCGAAACTGCTAATGGAAAAAGGATCAAGAAGCTTGTTTCAGCTGTTAAGCATGTCCAGACGAAGCGGAGGGGCAGACCAGCTAAAGTGCCTCGTGTTATGGAGAGACTTGACTGGGTGTCTGGACTAGAAACTGGTGAACCTGTTTCTTCGGTTAAAAGTGGGTCATATGAGCTATATATCTCAAATAGAAGGCCTGTCACAGAAGATGAGATTAAAAATGCCTTTGCAATGGCCCAGGCAGGACGAACTGATGACAGTTTGGTTGTAGTCATGCGACCCTCGCACGTGTACAAGAGATTCTTTGTGTCAATGCCTAACAAGTGGATAGGAGAACACATCACTCCAATGTCTCAAGATGTGATATTGCGCATGGGTAAGGGAGAATGGATTGCTAGATACAGCTATCATAATATTCGTCATACTGGTGGACTTAGTGGTGGGTGGAAACACTTTGTGTTGGACAACAACCTGGAAGAGTATGATGTTTGTGTGTTTAAACCAGCTGGCAAAATGAACGATACCTTGGTCATTGATATGACCATTTTCAGAGTTGTTCAGGAGATTGTTCCTCTTTCTGTTATGTCTCCAACAGGAAAAAGAGGTAGAAAGCCAGCACAGAATGCTAATCTGACTGAGACATAG 2700 0.417 MFKGELFFIQKIPDGFVCRMEGRTYGSFSLTGPSGNVWTVQLLKQDNDLFFHHGWSAFVVDHQLECGDLLVFRYDGQLHFTVQVFDKDACEKEVAFISECSQSSSDFLAIIGQKRDLKESSLDIAFDGVSKKTRGCKYEDQELEPSFVGKELLQYEVVRPIRMFRETEETSKACLANDAPVPFHVDNRNEEAAILYRSGKEDGRYFLGGVSLSNVSAQDEKKVAQSFTSNFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVHIAGVGKDGLDCQVGRLAIGKPSAGHAGTPRYMPMNAKVNSKCIRKVEQSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCPQSKAAHKKLATPRRHRVEDELSSQAKAAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQALPKTFSDNLKKKLPENVILKGPSGVAWNVAMITRDDTLYLAYGWEQFVKAHCLKESDFLVFKYNGESQFDVLVFDGGSLCEKASSYFVRKRGHTHTEAEHVGGSLDKKKDTREDSVEEGDIPLKAGVDCASPEKSVHANGTKEPINVPFETPTPSEEAFNADVESAGAEQVTSVGVTLSAVPTETANGKRIKKLVSAVKHVQTKRRGRPAKVPRVMERLDWVSGLETGEPVSSVKSGSYELYISNRRPVTEDEIKNAFAMAQAGRTDDSLVVVMRPSHVYKRFFVSMPNKWIGEHITPMSQDVILRMGKGEWIARYSYHNIRHTGGLSGGWKHFVLDNNLEEYDVCVFKPAGKMNDTLVIDMTIFRVVQEIVPLSVMSPTGKRGRKPAQNANLTET* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00914 899 CDD B3_DNA 496 578 IPR003340 GO:0003677
Lapu8g00914 899 Pfam B3 DNA binding domain 438 498 IPR003340 GO:0003677
Lapu8g00914 899 Pfam B3 DNA binding domain 502 576 IPR003340 GO:0003677
Lapu8g00914 899 Pfam B3 DNA binding domain 234 326 IPR003340 GO:0003677
Lapu8g00914 899 Pfam B3 DNA binding domain 12 87 IPR003340 GO:0003677
Lapu8g00914 899 Pfam B3 DNA binding domain 774 863 IPR003340 GO:0003677
Lapu8g00914 899 CDD B3_DNA 12 86 IPR003340 GO:0003677
Lapu8g00914 899 SUPERFAMILY DNA-binding pseudobarrel domain 435 501 IPR015300 -
Lapu8g00914 899 ProSiteProfiles B3 DNA-binding domain profile. 12 88 IPR003340 GO:0003677
Lapu8g00914 899 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 426 502 IPR044837 -
Lapu8g00914 899 ProSiteProfiles B3 DNA-binding domain profile. 773 871 IPR003340 GO:0003677
Lapu8g00914 899 CDD B3_DNA 232 326 IPR003340 GO:0003677
Lapu8g00914 899 Gene3D - 752 873 IPR015300 -
Lapu8g00914 899 Gene3D - 399 499 IPR015300 -
Lapu8g00914 899 Gene3D - 214 329 IPR015300 -
Lapu8g00914 899 SUPERFAMILY DNA-binding pseudobarrel domain 11 93 IPR015300 -
Lapu8g00914 899 SMART B3_2 773 871 IPR003340 GO:0003677
Lapu8g00914 899 SMART B3_2 2 88 IPR003340 GO:0003677
Lapu8g00914 899 SMART B3_2 234 332 IPR003340 GO:0003677
Lapu8g00914 899 SMART B3_2 493 580 IPR003340 GO:0003677
Lapu8g00914 899 ProSiteProfiles B3 DNA-binding domain profile. 234 330 IPR003340 GO:0003677
Lapu8g00914 899 SUPERFAMILY DNA-binding pseudobarrel domain 773 859 IPR015300 -
Lapu8g00914 899 CDD B3_DNA 435 496 IPR003340 GO:0003677
Lapu8g00914 899 Gene3D - 7 90 IPR015300 -
Lapu8g00914 899 Gene3D - 500 583 IPR015300 -
Lapu8g00914 899 SUPERFAMILY DNA-binding pseudobarrel domain 501 578 IPR015300 -
Lapu8g00914 899 CDD B3_DNA 772 869 IPR003340 GO:0003677
Lapu8g00914 899 ProSiteProfiles B3 DNA-binding domain profile. 487 580 IPR003340 GO:0003677
Lapu8g00914 899 MobiDBLite consensus disorder prediction 635 655 - -
Lapu8g00914 899 SUPERFAMILY DNA-binding pseudobarrel domain 227 328 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00914 Lapu-Chr8 27293089 27308301 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu8g00914 B3 3.5e-11 CL0405