Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00904 ATGCATCAATCAAACGGCTCCGATTCGTCGTTGCAGTCGCAGTCCACGGAGCAGAACGTTCCGCGGCAGCCCGCCGCCTCTCCCGCGGTGGCGCGCCCGCAGCAGTGGCTTCCGATGCAGTATCCTGCCGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGCCCTACGTGCCTTTCCACCACCACCAGTATGCGCCGCCGCACGTCCCGCACCAGCACCAACATCACCAGAACGGATCCGGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTTTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGTCTGAACTGGGCGTCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAATTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAATGAAAGGTCCCAGGCAATGACTCAGATGAACGGTGTTTACTGTTCCAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGTGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACTAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAATACGGTGAGATAGTATCTGTCAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAGTTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGAACTTTGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGATATGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCTCTTTATGGAGCCCACCAACAACAAGTAAGCTGA 1260 0.4984 MHQSNGSDSSLQSQSTEQNVPRQPAASPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPPYVPFHHHQYAPPHVPHQHQHHQNGSGGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDNLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMNFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS* 420
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00904 419 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676
Lapu8g00904 419 SUPERFAMILY RNA-binding domain, RBD 167 278 IPR035979 GO:0003676
Lapu8g00904 419 Gene3D - 90 170 IPR012677 -
Lapu8g00904 419 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Lapu8g00904 419 FunFam Polyadenylate-binding protein RBP47C isoform A 90 170 - -
Lapu8g00904 419 CDD RRM2_SECp43_like 183 262 - -
Lapu8g00904 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Lapu8g00904 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 365 - -
Lapu8g00904 419 CDD RRM1_SECp43_like 92 172 - -
Lapu8g00904 419 MobiDBLite consensus disorder prediction 63 90 - -
Lapu8g00904 419 FunFam Polyadenylate-binding protein RBP47 275 391 - -
Lapu8g00904 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Lapu8g00904 419 MobiDBLite consensus disorder prediction 264 295 - -
Lapu8g00904 419 MobiDBLite consensus disorder prediction 1 33 - -
Lapu8g00904 419 SUPERFAMILY RNA-binding domain, RBD 278 389 IPR035979 GO:0003676
Lapu8g00904 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
Lapu8g00904 419 Gene3D - 171 280 IPR012677 -
Lapu8g00904 419 Gene3D - 281 389 IPR012677 -
Lapu8g00904 419 SMART rrm1_1 185 259 IPR000504 GO:0003723
Lapu8g00904 419 SMART rrm1_1 290 357 IPR000504 GO:0003723
Lapu8g00904 419 SMART rrm1_1 92 167 IPR000504 GO:0003723
Lapu8g00904 419 MobiDBLite consensus disorder prediction 259 297 - -
Lapu8g00904 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Lapu8g00904 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Lapu8g00904 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 354 IPR000504 GO:0003723
Lapu8g00904 419 MobiDBLite consensus disorder prediction 1 23 - -
Lapu8g00904 419 CDD RRM3_NGR1_NAM8_like 288 359 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu8g00904 Lapu-Chr8 27188151 27192390 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00904 62 369 Eukaryotic Initiation Factors Gene Family AT4G34110 26.899 9.47e-31 122
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00904 8 27188151 27192390 Lapu8g00904 8 27188151 27192390 ECH
Lapu8g00904 8 27188151 27192390 Lapu9g02171 9 36438199 36444857 PCT