Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu8g00904 | ATGCATCAATCAAACGGCTCCGATTCGTCGTTGCAGTCGCAGTCCACGGAGCAGAACGTTCCGCGGCAGCCCGCCGCCTCTCCCGCGGTGGCGCGCCCGCAGCAGTGGCTTCCGATGCAGTATCCTGCCGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGCCCTACGTGCCTTTCCACCACCACCAGTATGCGCCGCCGCACGTCCCGCACCAGCACCAACATCACCAGAACGGATCCGGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTTTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGTCTGAACTGGGCGTCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAATTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAATGAAAGGTCCCAGGCAATGACTCAGATGAACGGTGTTTACTGTTCCAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGTGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACTAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAATACGGTGAGATAGTATCTGTCAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAGTTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGAACTTTGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGATATGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCTCTTTATGGAGCCCACCAACAACAAGTAAGCTGA | 1260 | 0.4984 | MHQSNGSDSSLQSQSTEQNVPRQPAASPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPPYVPFHHHQYAPPHVPHQHQHHQNGSGGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDNLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMNFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS* | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu8g00904 | 419 | SUPERFAMILY | RNA-binding domain, RBD | 58 | 171 | IPR035979 | GO:0003676 | |
Lapu8g00904 | 419 | SUPERFAMILY | RNA-binding domain, RBD | 167 | 278 | IPR035979 | GO:0003676 | |
Lapu8g00904 | 419 | Gene3D | - | 90 | 170 | IPR012677 | - | |
Lapu8g00904 | 419 | FunFam | Polyadenylate-binding protein RBP47B | 172 | 274 | - | - | |
Lapu8g00904 | 419 | FunFam | Polyadenylate-binding protein RBP47C isoform A | 90 | 170 | - | - | |
Lapu8g00904 | 419 | CDD | RRM2_SECp43_like | 183 | 262 | - | - | |
Lapu8g00904 | 419 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 91 | 171 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 80 | 365 | - | - | |
Lapu8g00904 | 419 | CDD | RRM1_SECp43_like | 92 | 172 | - | - | |
Lapu8g00904 | 419 | MobiDBLite | consensus disorder prediction | 63 | 90 | - | - | |
Lapu8g00904 | 419 | FunFam | Polyadenylate-binding protein RBP47 | 275 | 391 | - | - | |
Lapu8g00904 | 419 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 263 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | MobiDBLite | consensus disorder prediction | 264 | 295 | - | - | |
Lapu8g00904 | 419 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lapu8g00904 | 419 | SUPERFAMILY | RNA-binding domain, RBD | 278 | 389 | IPR035979 | GO:0003676 | |
Lapu8g00904 | 419 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 361 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | Gene3D | - | 171 | 280 | IPR012677 | - | |
Lapu8g00904 | 419 | Gene3D | - | 281 | 389 | IPR012677 | - | |
Lapu8g00904 | 419 | SMART | rrm1_1 | 185 | 259 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | SMART | rrm1_1 | 290 | 357 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | SMART | rrm1_1 | 92 | 167 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | MobiDBLite | consensus disorder prediction | 259 | 297 | - | - | |
Lapu8g00904 | 419 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 160 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 255 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 354 | IPR000504 | GO:0003723 | |
Lapu8g00904 | 419 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lapu8g00904 | 419 | CDD | RRM3_NGR1_NAM8_like | 288 | 359 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu8g00904 | Lapu-Chr8 | 27188151 | 27192390 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu8g00904 | 62 | 369 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.899 | 9.47e-31 | 122 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu8g00904 | 8 | 27188151 | 27192390 | Lapu8g00904 | 8 | 27188151 | 27192390 | ECH | |
Lapu8g00904 | 8 | 27188151 | 27192390 | Lapu9g02171 | 9 | 36438199 | 36444857 | PCT |