Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00860 ATGAACAATTCGGTCTTTCTGCACAACGCAAACCCAATCCACTTCACCTTCCACACAGCATTATCACAAACACAACGTAGGCACCTTCCATCTAACAAGCACTTATCACTGCGTTACCCACGCATCCAATGCTGCTGCGTCGAAATCGACATGGTAAAGAACTCGCAAGGCATTTACGCGCCCAAAAGTGACAAGGTCGTCGTTCTCTGGGACCTCGACAACAAGCCCCCTCGCGGCCCACCATACGACGCCGCCGTGGCGCTCAAAACCCTCGCCTCCCGCTTCGGCGAGATAGCAGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTTCCCCAGTGGGTTCTAAACCAGCGCCGCGAACGCAAGAACCTCGACATCCTCGAACGAAAGGGTGTGGTCACACCCTCGGAACCCTACACGTGCGGTGTGTGTGGGCGAAAGTGCAAGACCCACATGGACCTGAAGAAGCACTTCAAGCAGCTGCACCAGCGCGAGCGGCAGAAGAAGCTGAACCGGTTGAAATCGCTGAAGGGGAAGAAGAAACGGGACCGTTTCAAGGAACGGTTTTTGCGCGGGAATCATAAGTATGACGAGGCGGCGAGGACGCTGGTGGTGCCGAAGGTGGGGTACGGGCTGGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTTAAGACGGTGCAGGACAAACCGCAGGCGGCGGATTGGGCGCTGAAGAGGCAGATGGTGCATTCGATGAGTAGAGGGATTGATTGGCTTTTTTTGGTTTCGGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCGAGGGAGGCGGATTTAGGGACTGTGGTGGTGGGGGATTGGGATAGGGCGTTGGGGAGGAATGCGGATTTGTGGGTGCCATGGAGTGGGGTTGAGAATGGGGAAGTGGATTTGGTGCCTAAGAGGAAGAAGAGAAGAGAACATGGTTTTCAAGCTGATGATGATGATGATGATGATGATGATGACCATGATCACGATAATTGGGGGTTTTTGAATGAGAATGAGGAATTGGGGCACGAGTTTATGTTGCATAGTGAGGACGAGGATGAAGATGTGAAAAACTATCTTTTTTATGAGGATGATGATGAAGAAGAAGAGGAAGAGGAAGAAGATGGATTGTATATATTTTGA 1161 0.5306 MNNSVFLHNANPIHFTFHTALSQTQRRHLPSNKHLSLRYPRIQCCCVEIDMVKNSQGIYAPKSDKVVVLWDLDNKPPRGPPYDAAVALKTLASRFGEIADFSAYANRHAFVHLPQWVLNQRRERKNLDILERKGVVTPSEPYTCGVCGRKCKTHMDLKKHFKQLHQRERQKKLNRLKSLKGKKKRDRFKERFLRGNHKYDEAARTLVVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRNADLWVPWSGVENGEVDLVPKRKKRREHGFQADDDDDDDDDDHDHDNWGFLNENEELGHEFMLHSEDEDEDVKNYLFYEDDDEEEEEEEEDGLYIF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00860 386 MobiDBLite consensus disorder prediction 312 340 - -
Lapu8g00860 386 Coils Coil 162 182 - -
Lapu8g00860 386 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 45 376 - -
Lapu8g00860 386 Gene3D - 59 299 - -
Lapu8g00860 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Lapu8g00860 386 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Lapu8g00860 386 CDD PIN_LabA-like 152 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00860 Lapu-Chr8 26806741 26808342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00860 15 325 C2H2 Transcription Factor Family AT5G52010 65.635 1.47e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g00860 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00860 8 26806741 26808342 Lapu8g00860 8 26806741 26808342 ECH