Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00853 ATGTTCGGTTATTCCACCGGCACCGGCGAAAAGCGCCGCGTTGTGACAGTAACCCATGGAACCACCGACTACATATCCTATCTCCCTAACGAGTGTCTGGCTTCGGTGTTTCAGTTCCTAAGCTCCGCCGATCGGAACCGCTGCTCGCTTGTTTGCCGGCGGTGGCTCCAGATCGATGGACAGAGCCGCCACCGTCTCTCTCTGGACGCCAAATCAGCGCTGTTTGGGGAGATTCCATCGCTCTTCTCTCGGTTCAACTCGATCACGAAGCTCACGCTGATGTGCGATCGCAGATCCGTGAGCATAAGCGACGACTCGCTCGTGCTGATCTCTCAGTGCTGCCCTAACCTCACGCGGCTCTATCTCCTAGCTTGCCGTGAGCTAACTTACGCCGGAATAGAAGCGTTCGCCAAGAACTGTAAGGGATTGAAGAAGTTCGCGTGCGGATCGTGCACGTTCGGATCCAAAGGAATGAACGCGGTGCTCGACAACTGCGCCTTGCTGGAGAAGCTCTCCGTGATTCGCCTCCACGGAATCACCAAGGCGGAACCGATCGGACCCGGTGTGGCGGCGGCGTCGCTGAAGTCCATTTGCCTGAAGGAGCTCTCCAAGGGACAGGGTTTCGTAAGTCTGATTCTTGGGGCGAAGAATCTGAAGACCTTGAAGCTTATACGGTGCTCTGGCAATTGGGACCGGCTCTTCAAATCAATGGCCGATCGAAGGAGTAAACTGGTAAATGTTCAGGTCGGGATGCTTCGTCTTAGCGACGTTGGATTGAAAGCAATCGCGAATTACTCGAAATTGGAGATTTTATATGTTTCTAAGACTCCTCGTTGTTCTGATATTGGACTTGGTGCTATTGCTGAAAGGTGTAAGCTTTTGCGGGAGCTTCACATCGATGGATGGAAGACGAATAAAGTTGGTGACGAGGGGTTGATGGGTGTTGCTGAAGGTTGCCCTGATTTGGTTGAATTACTGCTAAGTGGTGTTAACCCTACCATTGCGAGTCTGCGAATGTTGGGAGATAAATGCCAGAATCTGGAGCGGTTGGCATTGTGTGGAAGTAATTGGGTGGGTGATACCGAGATTTCCTACATTGCTGCTCATTATGCGACTTTGAAGCACCTGTATATCAAGTGTTGTCCTGTTTCGGATGAAGGAGTGCAGGCATTGTGTCTGGCTTCGGTGTTTCAGTTTCTCAGCTCCGCCGATCGGAACCGCTGTTCTCTCGTTTGCCGGCGGTGGCTCCAGATCGAAGGGCAGAGCCGCCATCGTCTCTCGCTGAACGCTGAGTCAGAGCTGTTTTCGGCAATTCCGTCGCTCTTCTCTCGTTTCGACTCTGTCACGAAGCTCGCGTTGAAGTGCGACCGCAGATCCGTGAGCATACGCGACGACTCGCTCGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTCAAGCTCCGCGCGTGCCGGGAACTCACTGACGCCGGAATGGAAGCGTTCGCAAAGAACTGTAAAGGATTGAAAAAGCTCTCGTGCGGATCGTGCACGTTCGGATCCAAAGGAATGAACGCGGTGCTTGACAACTGTGCCTTGCTGGAGGAGCTCTCTGTGAAACGCCTTCGAGGAATCACCGATGCTGCGGCTGCGGAGCCGATAGGACCTGGGGTCGCGGCGGCGTCTCTGAAGACCGTTTGCCTGAAAGAGCTCTACAACGGACAGTGTTTCGGAACGCTGATTCTTGGTGCGAAGAATCTAAAGACCTTGAAGCTTTTCCGGTGCTCCGGCGATTGGGACAGGCTCTTTCAATTAATGGCAGATCGAATGACTAAAATGGTTGAAGTTCACCTCGAGAGGCTACAGATTAGCGACGTTGGATTGCAAGCAATTGCGAATTACTCGAATTTGGAGATTTTGCATCTGGTCAAGACACCTGAATGTTCTGATGTTGGACTTGCGGCTATTGCAGAAAGATGTAAGCTTTTGCGGAAGCTTCATATCGATGGATGGAAGGCAAATCGAATTGGGGATGATGGGTTGATAGGTGTTGCTAAAGGTTGCCCTAATTTGCTTGAATTAGTGCTAATTGGGGTTAACCCTACTAAGGTGAGTTTGGAAATGTTAGCATCTAATTGCCAGAATCTTGAGCGGTTGGCTTTGTGTGGAAGTGATTCGGTGGGTGATCCCGAGATATCTTGCATTGCTGCTAAGTGTGTGGCTTTGAAGAAACTGTGTATTAAGAGTTGTCCTGTTTCGGATCAAGGGATGGAGGCATTGGCGAATGGCTGTCCCAATTTGGTGAAAGTGAAGGTGAAGAAGTGTAAGGGGGTTACCCCTGAGGGTGGGGATTGGTTGAGGAGGACTAGGGGGTCAATTGCTGTTAATTTAGATACTGGCGAGACAGAACTTCAGGAAGCTAGTGCTAGTGATGGAGGGGTACAGGATAATGGTTTAGAGTTTCCTCAAATGCCTGCCCAGATAGCTGCGGCGGCTGCAGCATCAGCATCCGGCAGTACCGCCAGGTCTAGTTCGTTCAAGTCGAGGTTAGGACTTTTATCTGGGAGGAGCATAGTGGCTAACACTTTGAGGAGATGGTCGGGTGGTAGCACTAGTGCACGCCATGGTTAG 2613 0.5166 MFGYSTGTGEKRRVVTVTHGTTDYISYLPNECLASVFQFLSSADRNRCSLVCRRWLQIDGQSRHRLSLDAKSALFGEIPSLFSRFNSITKLTLMCDRRSVSISDDSLVLISQCCPNLTRLYLLACRELTYAGIEAFAKNCKGLKKFACGSCTFGSKGMNAVLDNCALLEKLSVIRLHGITKAEPIGPGVAAASLKSICLKELSKGQGFVSLILGAKNLKTLKLIRCSGNWDRLFKSMADRRSKLVNVQVGMLRLSDVGLKAIANYSKLEILYVSKTPRCSDIGLGAIAERCKLLRELHIDGWKTNKVGDEGLMGVAEGCPDLVELLLSGVNPTIASLRMLGDKCQNLERLALCGSNWVGDTEISYIAAHYATLKHLYIKCCPVSDEGVQALCLASVFQFLSSADRNRCSLVCRRWLQIEGQSRHRLSLNAESELFSAIPSLFSRFDSVTKLALKCDRRSVSIRDDSLVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCALLEELSVKRLRGITDAAAAEPIGPGVAAASLKTVCLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMADRMTKMVEVHLERLQISDVGLQAIANYSNLEILHLVKTPECSDVGLAAIAERCKLLRKLHIDGWKANRIGDDGLIGVAKGCPNLLELVLIGVNPTKVSLEMLASNCQNLERLALCGSDSVGDPEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRRTRGSIAVNLDTGETELQEASASDGGVQDNGLEFPQMPAQIAAAAAASASGSTARSSSFKSRLGLLSGRSIVANTLRRWSGGSTSARHG* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00853 870 CDD F-box_AtTIR1-like 392 423 - -
Lapu8g00853 870 ProSiteProfiles F-box domain profile. 22 58 IPR001810 GO:0005515
Lapu8g00853 870 SUPERFAMILY F-box domain 20 58 IPR036047 GO:0005515
Lapu8g00853 870 CDD F-box_AtTIR1-like 25 63 - -
Lapu8g00853 870 SUPERFAMILY RNI-like 427 791 - -
Lapu8g00853 870 FunFam F-box protein SKIP2 420 801 - -
Lapu8g00853 870 FunFam F-box protein SKIP2 60 415 - -
Lapu8g00853 870 Gene3D - 24 63 - -
Lapu8g00853 870 Pfam Leucine Rich repeat 372 392 IPR001611 GO:0005515
Lapu8g00853 870 Pfam Leucine Rich repeat 474 497 IPR001611 GO:0005515
Lapu8g00853 870 Pfam F-box 393 424 IPR041567 -
Lapu8g00853 870 FunFam F-box/LRR-repeat protein 3 isoform X1 24 64 - -
Lapu8g00853 870 Pfam F-box-like 25 58 IPR001810 GO:0005515
Lapu8g00853 870 SMART fbox_2 391 428 IPR001810 GO:0005515
Lapu8g00853 870 SMART fbox_2 28 68 IPR001810 GO:0005515
Lapu8g00853 870 SUPERFAMILY RNI-like 73 394 - -
Lapu8g00853 870 Gene3D Ribonuclease Inhibitor 71 412 IPR032675 -
Lapu8g00853 870 Gene3D Ribonuclease Inhibitor 424 788 IPR032675 -
Lapu8g00853 870 SMART LRR_CC_2 525 551 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 265 290 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 291 318 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 733 757 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 707 732 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 604 628 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 344 369 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 500 524 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 654 681 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 140 164 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 370 394 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 474 499 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 114 139 IPR006553 -
Lapu8g00853 870 SMART LRR_CC_2 629 653 IPR006553 -
Lapu8g00853 870 PANTHER UNCHARACTERIZED 392 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00853 Lapu-Chr8 26706796 26714401 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00853 8 26706796 26714401 Lapu8g00853 8 26706796 26714401 ECH