Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00848 ATGGCATCGGGAGGCAGGGATATGGATCGGGTCAAGGGCCCATGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTCGTGCAGACCCATGGCCCGAGGAACTGGTCGGCGATAAGCAAGTCTATTCCGGGTCGATCCGGCAAATCCTGCCGGCTACGGTGGTGCAATCAGCTCTCGCCGGAGGTGGAGCACCGCCCGTTCACGCCGGAAGAGGACGAAGCTATTGTCAGAGCACACAGCAGGTTCGGTAACAAGTGGGCCACCATAGCACGTTTACTCAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCGTTAGTCTCGACGTAACGGATCGTCCACCGCTTAAAAGATCCGCCAGCGTCGGCGCGGGTTACTTAAACCCGAGCAGCCCATCCGGGTCCGATTTAAGCGATCCGGGCCAGCCCGCTCTGTCCACCCCTTCGGACTCGGCCCGTTGCAGGCTTAATCTCATGGAAACCGCTTCTTCCCTCTCCGATCCAGCCACGTCACTGAGTTTATGCCTCCCCGGATTCGGCTCTGAGCCTAACCTGGTAACTGAACCGCGGCAAGCATCGCCACCGCCGCCGCCGCCTCCTCCTCCTCCTCCAGCGGCGCCGACAGTGGAGGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTTTTGAGGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAAGAATGGGTTTAGAATACAAACAGAAGCCATTGGAAACGCCGTGGTGAAGCGCATGGGAATCAGCAACATCGAGTGA 834 0.5839 MASGGRDMDRVKGPWSPEEDEALQRLVQTHGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDEAIVRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSLDVTDRPPLKRSASVGAGYLNPSSPSGSDLSDPGQPALSTPSDSARCRLNLMETASSLSDPATSLSLCLPGFGSEPNLVTEPRQASPPPPPPPPPPPAAPTVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMEQKNGFRIQTEAIGNAVVKRMGISNIE* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00848 277 Gene3D - 65 124 - -
Lapu8g00848 277 FunFam MYB transcription factor 12 63 - -
Lapu8g00848 277 MobiDBLite consensus disorder prediction 1 20 - -
Lapu8g00848 277 Pfam Myb-like DNA-binding domain 15 73 - -
Lapu8g00848 277 MobiDBLite consensus disorder prediction 134 160 - -
Lapu8g00848 277 MobiDBLite consensus disorder prediction 190 219 - -
Lapu8g00848 277 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lapu8g00848 277 CDD SANT 14 56 IPR001005 -
Lapu8g00848 277 Gene3D - 11 63 - -
Lapu8g00848 277 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Lapu8g00848 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Lapu8g00848 277 SMART sant 63 111 IPR001005 -
Lapu8g00848 277 SMART sant 11 60 IPR001005 -
Lapu8g00848 277 MobiDBLite consensus disorder prediction 124 160 - -
Lapu8g00848 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lapu8g00848 277 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lapu8g00848 277 CDD SANT 66 109 IPR001005 -
Lapu8g00848 277 MobiDBLite consensus disorder prediction 199 218 - -
Lapu8g00848 277 PANTHER MYB PROTEIN-RELATED 12 183 - -
Lapu8g00848 277 FunFam Transcription factor MYB44 66 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00848 Lapu-Chr8 26636696 26637858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00848 6 254 MYB Transcription Factor Family AT4G37260 52.518 1.13e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g00848 Myb_DNA-bind_6 1.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00848 8 26636696 26637858 Lapu2g00531 2 4557964 4560292 ECH
Lapu8g00848 8 26636696 26637858 Lapu3g01507 3 17689265 17690132 ECH
Lapu8g00848 8 26636696 26637858 Lapu8g00848 8 26636696 26637858 ECH
Lapu8g00848 8 26636696 26637858 Lapu9g02124 9 35953569 35954671 PCT