Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00844 ATGGCAACAGCCTCAGAGAACAGCACCAACACCACGCGCCCCCAGCGCGAGGCTAAGAAGAGAGCAGCAGCTGCCATATGCCAACTGCATGAAAACTCCAAGAAGAAGCAGCGCGTGGTTTTGGGAGACCTAACCAATGTCTCAGACGCCGCCGTTTCCGTTTCGGAGATTCAAAAACGGAAAAAAACCAAACTCGAGAAACCGGTGGCGACTGTTGCCACACCGGAGAAAGTCGACGAGAGAAGCGACCCGCAACTGTGTGGGCCCTATGTTTCGGATATATACGAGTACCTTTGCGGAATGGAGGTTCTTCCTAGTAAGAGACCGTTACCGGATTATATTCAGAAAGTTCAGAAGGATGTGAATGCTAACATGCGCGGGGTTTTGGTGGATTGGTTGGTTGAGGTTGCGGAAGAGTATAAACTGGTTTCGGATACGTTATATTTTTGTGTGGCTTATATAGATAGGTTTTTATCCTTGAATGTATTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGCTGCAATGCTTATCGCTTCGAAATATGAAGAGATTAAGCCACCCGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCCAAGGAAGAGGTTGTGAATATGGAAGCCGATGTTTTGAAGGCTTTGAAGTTTGAATTGGGTGGGCCTACAGTGAAGACATTCTTGAGGAGGTTCTGTAGAGTTGGTCAAGAGGGCATTGATACTTCTGATCTCCAGTTTGATTTCCTTAGCTGCTACCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTTGTGCCGTCTTTGGTGGCAGCATCCGTTGTATTCTTAGCGAGATTTATGTTAAGCACAAAGACACACCCTTGGAATTTGGCACTCCATCAACTCACTAGATATAAGCCTGCCGACTTCAAGGAATGTGTTCTAAACATACATGATTTATACCTCAGTAGGAGGGGGCCTTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACACCATCGCCTCCTGAGATACCCCGTTCTTATTTTGAATTTTCGGGGTCAGATTCTTAG 1089 0.4536 MATASENSTNTTRPQREAKKRAAAAICQLHENSKKKQRVVLGDLTNVSDAAVSVSEIQKRKKTKLEKPVATVATPEKVDERSDPQLCGPYVSDIYEYLCGMEVLPSKRPLPDYIQKVQKDVNANMRGVLVDWLVEVAEEYKLVSDTLYFCVAYIDRFLSLNVLSRQRLQLLGVAAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEADVLKALKFELGGPTVKTFLRRFCRVGQEGIDTSDLQFDFLSCYLAELSLLDYNCVKFVPSLVAASVVFLARFMLSTKTHPWNLALHQLTRYKPADFKECVLNIHDLYLSRRGPSLQAVREKYKQHKFKCVATTPSPPEIPRSYFEFSGSDS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00844 362 SUPERFAMILY Cyclin-like 224 349 IPR036915 -
Lapu8g00844 362 Gene3D - 109 222 - -
Lapu8g00844 362 CDD CYCLIN_AtCycA-like_rpt2 224 338 - -
Lapu8g00844 362 FunFam Cyclin A1 211 343 - -
Lapu8g00844 362 PIRSF Cyclin_A_B_D_E 1 353 IPR046965 GO:0016538|GO:0044772
Lapu8g00844 362 Pfam Cyclin, N-terminal domain 93 221 IPR006671 -
Lapu8g00844 362 CDD CYCLIN_AtCycA_like_rpt1 83 220 - -
Lapu8g00844 362 Gene3D - 93 343 - -
Lapu8g00844 362 SUPERFAMILY Cyclin-like 82 221 IPR036915 -
Lapu8g00844 362 PANTHER CYCLINS 52 341 IPR039361 -
Lapu8g00844 362 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Lapu8g00844 362 SMART Cyclin_C_2 224 347 IPR004367 -
Lapu8g00844 362 SMART cyclin_7 131 215 IPR013763 -
Lapu8g00844 362 SMART cyclin_7 228 316 IPR013763 -
Lapu8g00844 362 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Lapu8g00844 362 FunFam Mitotic cyclin 6 109 209 - -
Lapu8g00844 362 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00844 Lapu-Chr8 26598670 26602636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00844 5 356 Core Cell Cycle Gene Families AT5G43080 59.490 2.34e-149 423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00844 8 26598670 26602636 Lapu8g00844 8 26598670 26602636 ECH
Lapu8g00844 8 26598670 26602636 Lapu9g02115 9 35885754 35888423 PCT