Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00832 ATGGCTCTCGAAGCTCTCAACTCACCCACAGCAACTGCTCCGTCTTTCCCTTTCGACGACCCAACCATTCCATGGGCCAAACGCAAACGCTCCAAGCGTTCCCGTGACCACCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCAACACCGCCGCCACTAACCGCCACCTCACCGCGCCTCCTCCGCAGCCCACTCCAGAGCCTTCCTCCAAGCTCACCTACAAATGCTCCGTTTGCGACAAAACCTTCCACTCTTACCAAGCTCTCGGAGGACACAAGGCCAGCCACCGGAAACTCGCCGCCACCGACGACCAGCCCACCTCATCCGCCGTCACCGCCACAAGCACCGCCACCACCGCCGCCGCCGCCGGAGGCGGTAGGGCCCATGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGGTAATGGAAACGGAAACAGTAACAGTGTTGTAACCGCCTCGGAAGGTGTGGGGTCCACTCACACCGTGAGTCACGGCCACCGCGATTTCGATCTCAATATCCCGGCTTTTCCAGATTTCTCTACAAAGGTCGGAGAAGACGAGGTTGAGAGACCTCATCCTGTGATGAAGAAGCCACGTCTCTTCGTGATTCCCAAGATCGAAATCCCCCATTTCCAGTGA 699 0.588 MALEALNSPTATAPSFPFDDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGNTAATNRHLTAPPPQPTPEPSSKLTYKCSVCDKTFHSYQALGGHKASHRKLAATDDQPTSSAVTATSTATTAAAAGGGRAHECSICHKSFPTGQALGGHKRCHYEGNGNGNSNSVVTASEGVGSTHTVSHGHRDFDLNIPAFPDFSTKVGEDEVERPHPVMKKPRLFVIPKIEIPHFQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00832 232 MobiDBLite consensus disorder prediction 1 37 - -
Lapu8g00832 232 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 195 IPR044653 GO:0003700
Lapu8g00832 232 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Lapu8g00832 232 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Lapu8g00832 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Lapu8g00832 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Lapu8g00832 232 SUPERFAMILY beta-beta-alpha zinc fingers 79 157 IPR036236 -
Lapu8g00832 232 Pfam C2H2-type zinc finger 80 104 - -
Lapu8g00832 232 Pfam C2H2-type zinc finger 134 158 - -
Lapu8g00832 232 Gene3D Classic Zinc Finger 78 157 - -
Lapu8g00832 232 SMART c2h2final6 80 102 IPR013087 -
Lapu8g00832 232 SMART c2h2final6 135 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00832 Lapu-Chr8 26480349 26481460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00832 1 228 C2H2 Transcription Factor Family AT1G27730 53.750 6.12e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g00832 zf-C2H2_6 9e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00832 8 26480349 26481460 Lapu9g02098 9 35760074 35760790 PCT