Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00404 ATGACAAATCAACACCCCATTTCGCGTTGTACTTTCCTCTTGTTTCTCTTGTACGTTCTACTCAATGCAGCTCCTATGAGTTGCAAATCCACCATTGAGCCATGCTCCAACAATAACTCCTGCAATGCTCTTCTTGGCTACACCCTTTACACTGACCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGCACTTCTCACTGCCAATGCCATTGACATCTCTTACCCTGATGTAGAGCATCACATTCTCCCTTCCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGGATTAGAAAATCAGTGTCTGCCCGTTACAGGACTCGACCTTCTGATACCCTCTCTTCCATTGCAGATTCAGTGTATGGTGGTCTGGTGTCCACTGATCAGCTTAGGGAGGCTAATTCCATAGTTGACCCTTCGGTGCTTGATGTGGGTCAGAACCTTGTGGTGCCACTTCCATGCACTTGCTTCAACGGCAGTGATAATTCTTTGCCTTCAATTTACCTCTCCTATGTGGTAAAGCCAATTGATACTTTGGCTGCCATTGCAGCTAGATATTTCACCACACTTACTGATTTGATGAATGTTAATGACATGGGCAGTGCAGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATACCTGCTTGTGCATCAAATTTTCCAAAATATGCCACTGATTTTGGCATGCTTGTCCCTAATGGAAGCTATACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAAAATTTAGATTTATACTGTATTCCCTCTTCTCTAGCTGTCTCTTGCTCCAGCATGCAATGCAAGAGAAGCAATCTTAAACTTGGGAATGTTACCGTGCAACAGATGAGCTCAGGTTGCAATGTGACATCGTGCAATTATGATGGTTTTGTCAAAGGAAACATATTAACAAGGATATCCCCATCTCTTCAGCCTCATTGTCCAGGTCCTCAACGATTCCCTCCACTTATAGCGCCACCTATATCTGTTACAAGGGAATCAGTTTCTTCATTTCCTCCATCTCTGTCACCGTCACAGTCACCATTACTGTCACTCTCACCATCATCGCTGTCAGAAGGAACAGGTATAACAGCACCCAAATCTTCAGTCATGCCTACAACCAGATTCTCTCCTGCAAATGGCCCTGTCGGTAGGATTGCTTCTGCTGCTCCCTCTTTGGTGAATCCTATTTCCTTTTTGATGCCCTCATGTATGTTGTTGCTTACAAAGTTGATGATCCTTGTGCCTTCCTAA 1290 0.445 MTNQHPISRCTFLLFLLYVLLNAAPMSCKSTIEPCSNNNSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKVPITCSCADGIRKSVSARYRTRPSDTLSSIADSVYGGLVSTDQLREANSIVDPSVLDVGQNLVVPLPCTCFNGSDNSLPSIYLSYVVKPIDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPACASNFPKYATDFGMLVPNGSYTITASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNLKLGNVTVQQMSSGCNVTSCNYDGFVKGNILTRISPSLQPHCPGPQRFPPLIAPPISVTRESVSSFPPSLSPSQSPLLSLSPSSLSEGTGITAPKSSVMPTTRFSPANGPVGRIASAAPSLVNPISFLMPSCMLLLTKLMILVPS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00404 429 CDD LysM 113 158 IPR018392 -
Lapu8g00404 429 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Lapu8g00404 429 SUPERFAMILY LysM domain 112 160 IPR036779 -
Lapu8g00404 429 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Lapu8g00404 429 Gene3D LysM domain 168 229 IPR036779 -
Lapu8g00404 429 SUPERFAMILY LysM domain 177 222 IPR036779 -
Lapu8g00404 429 CDD LysM 178 220 IPR018392 -
Lapu8g00404 429 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 330 - -
Lapu8g00404 429 SMART LysM_2 178 221 IPR018392 -
Lapu8g00404 429 SMART LysM_2 112 159 IPR018392 -
Lapu8g00404 429 Gene3D LysM domain 108 167 IPR036779 -
Lapu8g00404 429 MobiDBLite consensus disorder prediction 347 385 - -
Lapu8g00404 429 Pfam LysM domain 113 159 IPR018392 -
Lapu8g00404 429 Pfam LysM domain 179 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00404 Lapu-Chr8 19705815 19708803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00404 12 413 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 62.836 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00404 - - pvu:PHAVU_008G163700g 729.939