Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02432 ATGAAGGTTTTCGTGAAGACTCTTAAAGGCACTCATTTCGAAATCGAAGTGAAGCCACAAGACACGGTTTCTGAAGTGAAAAAAAGTATTGAATCTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTCCAAATGCACCATCGACCAAGACACCACAGACTAGTGCGCCTCCTACTTCAACAACGCCAGTGTCAGCAGCACCTCAAACTCCTGCTGCAACTGAGGCACTGCCACCAACTGTTACTGCACCTGTCTCTTCGCCTTCTCCAGCTCCAGCTCCAGCTCCAAGTTTAAATTTGCCGTTATGTCTCAGGGAGGGATTTGATATCTATGGGCAGGCTGCATCCAATCTCGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTCCGAGCTGCCTACAACAACCCAGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCGGAGCAAGCTGACGCTCCACTTGTAGCCCGAGCACCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCTCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGACCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGCCTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCACTGGATTTTCTACGCAATAGTCATCAATTCCAAGCCTTGCGGGCTATGGTTCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTAGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAAGGGAACATATTGGGACAGCTGGCTGGTGGCATGCCACAAGCAGTGACTGTCACTCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAGGTCTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1203 0.4746 MKVFVKTLKGTHFEIEVKPQDTVSEVKKSIESVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGEGSTTPNAPSTKTPQTSAPPTSTTPVSAAPQTPAATEALPPTVTAPVSSPSPAPAPAPSLNLPLCLREGFDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQADAPLVARAPAGAQPANPPAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02432 400 FunFam UV excision repair protein RAD23 homolog 161 211 - -
Lapu7g02432 400 SUPERFAMILY XPC-binding domain 271 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lapu7g02432 400 MobiDBLite consensus disorder prediction 77 113 - -
Lapu7g02432 400 NCBIfam UV excision repair protein Rad23 1 398 IPR004806 GO:0006289
Lapu7g02432 400 FunFam UV excision repair protein RAD23 homolog 346 394 - -
Lapu7g02432 400 Gene3D - 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lapu7g02432 400 Pfam UBA/TS-N domain 171 206 IPR015940 -
Lapu7g02432 400 Pfam UBA/TS-N domain 355 390 IPR015940 -
Lapu7g02432 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lapu7g02432 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 388 - -
Lapu7g02432 400 CDD Ubl_Rad23 1 74 - -
Lapu7g02432 400 Gene3D - 1 80 - -
Lapu7g02432 400 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515
Lapu7g02432 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Lapu7g02432 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
Lapu7g02432 400 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Lapu7g02432 400 SMART uba_6 168 208 IPR015940 -
Lapu7g02432 400 SMART uba_6 355 392 IPR015940 -
Lapu7g02432 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Lapu7g02432 400 SUPERFAMILY UBA-like 165 214 IPR009060 GO:0005515
Lapu7g02432 400 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lapu7g02432 400 FunFam UV excision repair protein RAD23 B 265 330 - -
Lapu7g02432 400 SMART CBM 272 315 IPR006636 -
Lapu7g02432 400 CDD UBA1_Rad23_plant 162 211 - -
Lapu7g02432 400 Gene3D - 161 211 - -
Lapu7g02432 400 Gene3D - 347 394 - -
Lapu7g02432 400 MobiDBLite consensus disorder prediction 77 115 - -
Lapu7g02432 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lapu7g02432 400 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Lapu7g02432 400 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Lapu7g02432 400 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Lapu7g02432 400 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Lapu7g02432 400 MobiDBLite consensus disorder prediction 223 251 - -
Lapu7g02432 400 FunFam UV excision repair protein RAD23 1 80 - -
Lapu7g02432 400 CDD UBA2_RAD23_plant 351 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02432 Lapu-Chr7 40735084 40739660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02432 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.47e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02432 7 40735084 40739660 Lapu7g02432 7 40735084 40739660 ECH