Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02429 ATGCCCGAGACTCGGAAACAACCTGCTTCTAAACCGAAGCAGAAGCTTCACCACTCCCTGCAAGATTCCAAAGCGATGAGAAAACTGCGTATCTTATATAACGATCCTGATGCCACTGATTCATCTGGTGATGAGTCGGACAGGACTCGCAAGCTGAGAAAAACAAAGAGAAGCATGTGTGAGATCCTTCTTCCCCCTCTTCCTCAGGCGTTCACCTCTCCTGAAACAAGTTCCTTTGAGGTGAATAGTAACACAAATGCAGTGAGGGTGAGAGTTTGCATTGAAGGTCAACCCCAGAGTAAGAAAAGGGTTTTGACCCAAACCCCGTCAACGAGGCGGAACACTTCTGGAAAATACAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCCGAGATTCGTGACCCTTTTCAGAGTACTCGTATATGGCTTGGTACCTTCAACACTGCGGAAGAGGCTTCTCAAGCCTACGAGGCCAGAAGGCTTGAGTTTGAAGCCATGGCAAAGGCCCGAGCCTACAAAGATGTTTCTGATTCTGATTCTGTTCCTGGTTGTGAGCCTTTGCCCACAACTTCTGATAAGAGTATATGCTGCAACTCTTCTGATGCTGCTACTGCTGTGTCTGTGTCTGAGAAGTTTTCTACTACGTCTGATGACTCGGATAGTGTGTTGTCACACCCATCACCTTCTTCTGTGCTTGAGTTGGATACTTCGGCTTCCAAACCCAAGGGTAATGTTTCGAGTGAGGAAGCTGTTGAGGCAAATTCGTTGGTCCCTGAATTTGCTGAACTAGAAATTCCAGATTTGAGTCTGTTGAACTTGCCATCACCTTACGAAGGTGCTACCGCTGCTCTTCCGCCTGGCACTGAGCTAGATTTTGGACTTGATTTTGATTGGTTATCATTTGAGGATTATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCACATTTGTGGGTTTGATAACAATGAGCCTAGCGAGCTTCCTGATTTCGATTTTGGTGATTTCTGTGCTGATGAGTTTGCTGGTTGGACTGAAGAGCCCCTCAACATACCTTGTGCCTAA 1077 0.4643 MPETRKQPASKPKQKLHHSLQDSKAMRKLRILYNDPDATDSSGDESDRTRKLRKTKRSMCEILLPPLPQAFTSPETSSFEVNSNTNAVRVRVCIEGQPQSKKRVLTQTPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAMAKARAYKDVSDSDSVPGCEPLPTTSDKSICCNSSDAATAVSVSEKFSTTSDDSDSVLSHPSPSSVLELDTSASKPKGNVSSEEAVEANSLVPEFAELEIPDLSLLNLPSPYEGATAALPPGTELDFGLDFDWLSFEDYGQGFDDFGGLEDIHICGFDNNEPSELPDFDFGDFCADEFAGWTEEPLNIPCA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02429 358 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 MobiDBLite consensus disorder prediction 1 34 - -
Lapu7g02429 358 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 240 - -
Lapu7g02429 358 MobiDBLite consensus disorder prediction 1 56 - -
Lapu7g02429 358 MobiDBLite consensus disorder prediction 41 56 - -
Lapu7g02429 358 Gene3D AP2/ERF domain 117 175 IPR036955 GO:0003700|GO:0006355
Lapu7g02429 358 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Lapu7g02429 358 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 MobiDBLite consensus disorder prediction 100 117 - -
Lapu7g02429 358 MobiDBLite consensus disorder prediction 100 122 - -
Lapu7g02429 358 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 MobiDBLite consensus disorder prediction 216 252 - -
Lapu7g02429 358 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lapu7g02429 358 MobiDBLite consensus disorder prediction 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02429 Lapu-Chr7 40670638 40673237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02429 21 357 AP2-EREBP Transcription Factor Family AT1G68550 34.770 1.09e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu7g02429 AP2 1.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02429 7 40670638 40673237 Lapu7g02429 7 40670638 40673237 ECH