Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02427 ATGAGTACAGCTAAGAACGGGGCAAACGCGGTTGGGGCCAAAACGGCAAGAGCATGCGACAGCTGCATAACAAAACGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCCTTGGCTCGCAGACACGAACGAGTCCGCCTGAAAACGGCATCGTACAAGTCCACCGACGAACAGCAGCATCAACCTCCCACATGGCACACTAAAAAAGCTCGTACGCCCAGACAAGGAAAACACTCTCGTAGCAACAACCCCTTTCATTTGGTCCCTGAGGTGGGTTCGGAAGAGGTGAATTCCCATGACGAAAACGAGGAGCAGCTTCTTTATAGGGTTCCCATATTCGACCCCTTTGTTGCTGAGCTATGTGGGACCAATAGTTCTTCTCCTTCTTCGGTGACTTCAACTGATCAAGGAGTAGCAGCTGCTGTGACAGAGGCTGAAAACAAAGGGGTTCAGAGCAATGTTTTTTATCACAGTAATAATGAGATGGAAAACTTGCATGGGATGCTTCCTTCGGATGCAGAACTTGCTGAGTTTGCTGCTGACGTCGAGAGTTTATTGGGTAGGGGGCTTGAAAACGAGTGTGTGGGGATGGAGGATTTGGGACTCATTGATGCGAAGGAGGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGATGGAAGAGGAAGAGAGCCCTGAGATGGAGATGGAGATGGAGATGGTGGGAAGAGATGTGCCGTTTGAGTTGAGCTTTGATTACGAGACGTGTGAAGAGGTGAAGGAGAAGGTTTGTGACTTGGAATTGGGCAAGGATAAGGGGAATGAAGAAGAACAGGGAGAGAATGATGAGGTGAAAAAGAAGAAGATATCGTTGCAGCTTGATTACGAGGCGGTGATTATTGCCTGGGCTGGCCAAAAGTCTCCCTGGACCACTCCTGACAAACCAAACTTGGACCCTGAAGAATGCTGGCACGAATGCATGGAAAGTTGTGGAACAGCAATTCATGATCCTTATGGCGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATTGACGGAGGCAGAGAGGCAAGAGTGTCAAGGTACAGAGAAAAGCGCCGGACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCAACATTTCCTTTGCTTAGTCAATAA 1254 0.4896 MSTAKNGANAVGAKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQHQPPTWHTKKARTPRQGKHSRSNNPFHLVPEVGSEEVNSHDENEEQLLYRVPIFDPFVAELCGTNSSSPSSVTSTDQGVAAAVTEAENKGVQSNVFYHSNNEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEDLGLIDAKEEECSVGSGKVKMEEEESPEMEMEMEMVGRDVPFELSFDYETCEEVKEKVCDLELGKDKGNEEEQGENDEVKKKKISLQLDYEAVIIAWAGQKSPWTTPDKPNLDPEECWHECMESCGTAIHDPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLSQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02427 417 MobiDBLite consensus disorder prediction 65 102 - -
Lapu7g02427 417 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lapu7g02427 417 Pfam CCT motif 362 404 IPR010402 GO:0005515
Lapu7g02427 417 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Lapu7g02427 417 Coils Coil 281 301 - -
Lapu7g02427 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 406 - -
Lapu7g02427 417 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lapu7g02427 417 CDD Bbox1_BBX-like 18 61 - -
Lapu7g02427 417 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515
Lapu7g02427 417 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02427 Lapu-Chr7 40632915 40634501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02427 5 404 C2C2-CO-like Transcription Factor Family AT1G25440 47.406 2.95e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu7g02427 zf-B_box 8.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02427 7 40632915 40634501 Lapu7g02427 7 40632915 40634501 ECH