LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g02378	ATGGAGGTGCAACCGCCAACCCCCTCCACTGCGCCTCCACCTCCGCCGCCGCACCTCAACTACCCCGACTCTGTCGAATCCTCGCCGCGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTTGCGCCGGCGTCGTCCAAGCTCCGTCTCATGTGTAGCTACGGCGGGCACATCGTCCCGCGCCCCCACGACAAGTCCCTCTGCTACGTCGGCGGCGACACGCGCATCATCGTTTCGGAACGCGCCACCTCACTCGCGGACCTCTCCACGCGCCTCTCGAAGACGTTCCTGAACGGACGCCCCTTCACGCTCAAGTATCAGCTCCCGAACGAGGACCTCGATTCCCTCATCTCTGTCACCACCGACGAAGACCTGGAGAACATGATCGATGAGTACGACCGCACCGCCGCCGCCGCCACTTCCGTCGTCAAACCCTCCCGCATCCGCCTGTTCCTCTTCCCTACCAAACCCGATTCCGCTCACTCCATTCCCCCCCAAATCCTCGACACCTCAACCAAATCGGACGACTGGTTCTTGAATGCCCTAAACGGCAACGGAGTGCCTAACCGAGGCTTTTCCGACTCCGCTTCTGTTAATTGCCTCGTCGATCTTGACGACGAGGTTGCCGGGAGCAACCTCGAACCCGGTTCGAAGGACGTTGGGGAAGGTGGTCCTGGTGCTGGTGTTGGTGGTGGCGCTTCGTTGGGTGGATCTTTCGGGAACGGAAAGAATTTGAAGCAGGACGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCGTCGTTTGGGTCCACTTCATCGTCACCGTCGCTCGCTAATTTGCCGCCGATTAGGGTTCATGTAGTGGAGGATCAGAAGGTAATGGGGATTGAGGAGCAGTTCGCGCAGATGGGAGTTGGTGTCGGGCAGAAGCAGCAGGATGAGGCTTTTGTTTTACTGTCTTCGCCGCCGCCTCCCCCTGTCCCGGCCACCCTCGCTGCCGTGGGTGTACCGATTGGACCGCCGACGATTGTCCCTGGGGATTATCACAATCGGGTTGTCTCCGATGATGAGAGATCCGATCACGGGGTTCCTGTTGGGTATAGAAAGCCTCCAACTCCTCAGCCACAGTTACAGACACAAACACAGTCGCAGACGCAAACACAAACACTTGGGCCTCAATTTCAACAGAAGTCAACTGGTGGTAGCGGCGGTGTTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAACGCAATTGCGCGTCAGAAACCTGCTGTTTATCAAGAACAAGTTCAGATTCAATCTGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTCAATGTTTCTGATCCGCACGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTACAACAGCAATTTGAACAGCATCAGCAGTCGCAGCAGCTGCCACAACAGCAATTCGACCAGCACCAGCAGGCGCTGCCACAACAGCAGCAACAGTTTATACATGGCACACATTTCATCCATCATAACCCTGCAATTTCTGCGTATTATCCTGTATATCCTTCCCAGCAACATCCTCAGCATCCACAACATCCACAGCATCCACAACATCCACAGCTTTACTATGTGCATGCGAGGCAGGCGCAGGCTTACAACCTGCCTGTGCAGCAGGCTAATATGGGTGAGTCTGCGGGAAATCTAGCTTCTAGCCGGCCTCAAACTCCACCAAATCCTGCTACATTGGTTCCACAATCTGCTGCATACAATCCCATGAGAAATGCTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCAGCAACTGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCCACAGTATGTCACTTACTCACAGATTCACCATCCATCTCAGTCCATGGCTCCCAACTCTGCTCCCCAGGCGAATTATACGTTTGATTATGCGGACCCTGCTCATGCTCAAATATACTACTCTCAACCTGTAGCACCCACAATGCCTTCCCAGTACCAGACTATGACTACTGCTGCTGTGATGATGCAGGAAGGCTCAGCTCAACATCCCTCAGACAATTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA	2133	0.5438	MEVQPPTPSTAPPPPPPHLNYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVSERATSLADLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSVVKPSRIRLFLFPTKPDSAHSIPPQILDTSTKSDDWFLNALNGNGVPNRGFSDSASVNCLVDLDDEVAGSNLEPGSKDVGEGGPGAGVGGGASLGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGVGQKQQDEAFVLLSSPPPPPVPATLAAVGVPIGPPTIVPGDYHNRVVSDDERSDHGVPVGYRKPPTPQPQLQTQTQSQTQTQTLGPQFQQKSTGGSGGVDLPSPDSVSSDSSLANAIARQKPAVYQEQVQIQSGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQSQQLPQQQFDQHQQALPQQQQQFIHGTHFIHHNPAISAYYPVYPSQQHPQHPQHPQHPQHPQLYYVHARQAQAYNLPVQQANMGESAGNLASSRPQTPPNPATLVPQSAAYNPMRNAPMPKTEMNAYRAATAGTPQLVQVPTSQHQPQYVTYSQIHHPSQSMAPNSAPQANYTFDYADPAHAQIYYSQPVAPTMPSQYQTMTTAAVMMQEGSAQHPSDNLKQQIRTSQPL*	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	254	275	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	427	445	-	-
	Lapu7g02378	710	Pfam	PB1 domain	63	154	IPR000270	GO:0005515
	Lapu7g02378	710	PANTHER	OS05G0427100 PROTEIN-RELATED	20	546	-	-
	Lapu7g02378	710	ProSiteProfiles	PB1 domain profile.	47	155	IPR000270	GO:0005515
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	475	498	-	-
	Lapu7g02378	710	CDD	PB1_UP2	51	153	-	-
	Lapu7g02378	710	Gene3D	-	67	153	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	688	710	-	-
	Lapu7g02378	710	SMART	PB1_new	62	155	IPR000270	GO:0005515
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	566	587	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	368	418	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	343	454	-	-
	Lapu7g02378	710	SUPERFAMILY	CAD & PB1 domains	63	163	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	346	360	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	24	40	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	210	275	-	-
	Lapu7g02378	710	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g02378	Lapu-Chr7	40055179	40058574	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g02378	44	205	MAP Kinase Kinase Kinase	AT1G79570	34.706	3.98e-23	103

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu7g02378	7	40055179	40058574	Lapu7g02378	7	40055179	40058574	ECH
	Lapu7g02378	7	40055179	40058574	Lapu4g00224	4	2218581	2221441	ECH