Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02374 ATGCTTAATAAAGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCGCTGCGGCTGCCTCTGGTCAAATGGCGTCAAACAGAGGCGTCTACAGTTCGCTGTACTCGGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCCAACTGTAGCAACGGCGGCGGCGTTTCGCTGTATCCGTACTCCGAGGCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTAAGGCAAGAGAACGGCCAGCTCCGGGCCGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATTCAGGCTTCCCTGGAGAGTCAGTTTGCGGCCGCCGGCAGTGGCTCCTCTGGCCAGGCTCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGGAAAGAAAATTATGCCGATTGGAATAGCAACAATAATCACAACAATATTATGAATAATAATAATAATAATAATAATAATAAGGACATGCAGGAAGTTTCGGACGAGAGTCCAACGAGTGTGATGGAGAATAACGTGGTGGAAGTAGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGCAACTCGCAATAAAGGCGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGCACATGCCCATACGGAGACCACTGCCAGTTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1104 0.519 MLNKDACSPSSNGGFGAAAASGQMASNRGVYSSLYSALSNDNLPSLSANCSNGGGVSLYPYSEATTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQFAAAGSGSSGQAQPTLFDVLHGFRSLHIGEGKENYADWNSNNNHNNIMNNNNNNNNNKDMQEVSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNATRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02374 367 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Lapu7g02374 367 PANTHER CCCH ZINC FINGER/TIS11-RELATED 76 354 IPR045877 GO:0003729
Lapu7g02374 367 SUPERFAMILY CCCH zinc finger 316 350 IPR036855 GO:0046872
Lapu7g02374 367 Coils Coil 90 117 - -
Lapu7g02374 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 308 IPR000571 GO:0046872
Lapu7g02374 367 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Lapu7g02374 367 FunFam zinc finger CCCH domain-containing protein 15-like 276 315 - -
Lapu7g02374 367 Gene3D - 277 315 - -
Lapu7g02374 367 Gene3D - 316 352 - -
Lapu7g02374 367 SUPERFAMILY CCCH zinc finger 279 314 IPR036855 GO:0046872
Lapu7g02374 367 FunFam Zinc finger protein 36, C3H1 type-like 1 316 352 - -
Lapu7g02374 367 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Lapu7g02374 367 SMART c3hfinal6 320 347 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02374 Lapu-Chr7 39972716 39975823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02374 61 362 C3H Transcription Factor Family AT1G68200 48.710 5.51e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g02374 zf-CCCH 3e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02374 7 39972716 39975823 Lapu7g02374 7 39972716 39975823 ECH