Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01779 ATGGACGCTGGCAGTTCCACGGACGAAACCACCACCACCAGCGACTCTCTTTCGCTTCCGCCCAACCTATCTCCGCCGCCTCTCATCCGCGTCGGAAGCGGCGTCGTCGACCCCGAAGGTGTTTCCGGAGAGGCCGAATCCCGCAAACTTCCGTCCTCCAAATACAAAGGAGTTGTGCCGCAACCCAATGGTCGTTGGGGCGCTCAGATTTACGAGAAGCATCAGCGTGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGACGCGACGCTGTCACAAACTTCAAGCCTCTAGCTGGAGCCGGCGACGACGCAGAGTCCGAGTTCCTCAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGTACTCGCGGCAGCAGGCGCCGCCGCGAAGCCGAGGCCGCGTCGAGCGGCCCGAAGGCGCGTGAGCAGCTGTTCGAGAAAACAGTGACTCCCAGCGACGTCGGGAAGCTAAATAGATTGGTGATACCGAAGCAGTACGCGGAGAAGCACTTCCCGTTGAGCGGCGCATCTGGTAGCGGAGTCTCGCCGTGTGCTGCGGCCGCCGCGAAGGGAGTACTGTTGAACTTCGAGGATGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAAGGATGGAGCCGGTTCGTGAAGGAGAATAATCTGAGAGCCGGTGACGCGGTTCGTTTTTTCAAGTCAACCGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCCAGGAGCAGTGGCGGTATCTGCCAGCTTAATAACAATAATGCTGGCGGTTTGTTTCTCCCAGTGGGACCAATTGTTGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGATGGTGTCCCGGTTGGTTATGAGGGGAAGAGGAAAGAGATGGAACTGTTTGCATTTGAATGTAGCAAGAAGTTAAAAGTAATCGGAGCTTTGTAA 1074 0.5689 MDAGSSTDETTTTSDSLSLPPNLSPPPLIRVGSGVVDPEGVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRGSRRRREAEAASSGPKAREQLFEKTVTPSDVGKLNRLVIPKQYAEKHFPLSGASGSGVSPCAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCKARSSGGICQLNNNNAGGLFLPVGPIVEPVQMVRLFGVNLLKLPGSDGVPVGYEGKRKEMELFAFECSKKLKVIGAL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01779 357 CDD AP2 53 108 IPR001471 GO:0003700|GO:0006355
Lapu7g01779 357 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
Lapu7g01779 357 MobiDBLite consensus disorder prediction 138 169 - -
Lapu7g01779 357 MobiDBLite consensus disorder prediction 1 64 - -
Lapu7g01779 357 MobiDBLite consensus disorder prediction 1 19 - -
Lapu7g01779 357 MobiDBLite consensus disorder prediction 138 162 - -
Lapu7g01779 357 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Lapu7g01779 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 330 IPR044800 GO:0003700
Lapu7g01779 357 SMART rav1_2 54 115 IPR001471 GO:0003700|GO:0006355
Lapu7g01779 357 FunFam AP2 domain-containing protein RAP2.8 53 110 - -
Lapu7g01779 357 CDD B3_DNA 170 278 IPR003340 GO:0003677
Lapu7g01779 357 ProSiteProfiles B3 DNA-binding domain profile. 171 284 IPR003340 GO:0003677
Lapu7g01779 357 Pfam B3 DNA binding domain 171 267 IPR003340 GO:0003677
Lapu7g01779 357 Gene3D - 159 288 IPR015300 -
Lapu7g01779 357 ProSiteProfiles AP2/ERF domain profile. 54 109 IPR001471 GO:0003700|GO:0006355
Lapu7g01779 357 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Lapu7g01779 357 SMART B3_2 171 283 IPR003340 GO:0003677
Lapu7g01779 357 SUPERFAMILY DNA-binding pseudobarrel domain 169 280 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01779 Lapu-Chr7 33447510 33449004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01779 5 357 B3 DNA Binding Superfamily AT1G25560 58.915 1.24e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lapu7g01779 B3 3.1e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01779 7 33447510 33449004 Lapu7g01779 7 33447510 33449004 ECH