Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02196 ATGGTTCTCTCCAAAACGGCCTCCGAATCCGACGTTTCTGTCCACTCCACCTTCGCTTCTCGCTACGTCAGAACTTCACTTCCCAGGCATGTGTTCAGGATTCCGGAGGAGTCGATACCAAAGGAAGCAGCGTACCAGATCATAAACGATGAGTTGATGTTGGATGGGAACCCGAGATTGAACTTGGCATCATTTGTGACAACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTACAGAATCGATGTGTGAACATGATAGCTCATCTTTTTAATGCACCACTACAAGAATCTGAAGCTGCAGTTGGTGTTGGCACGGTCGGTTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAAAACAAAAGGAAAGAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGAGTTTTGGTTCTGTTTGTGTGAAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGACAAGGCTGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAGGATGTAAAACGCCTCAATGATCTTCTAATTGAAAAGAATAAGCAAACTGGGTGGGACACTCCTATTCATGTTGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATTTACCCAGAGCTTGAGTGGGACTTCCGATTACCACTGGTGAAGAGCATCAATGTCAGTGGACACAAGTATGGTTTGGTGTATGCTGGAATCGGTTGGGTTATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATATTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGGCGGTTTTCCATTGTGTCCAAAGACGATGGTGTGCCTTTGGTGGCTTTCACCCTGAAAGACCACACCCACTTTGATGAGTTCCAAATCTCTGACATGCTGAGGCGTTTTGGGTGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACAGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTTGCAGAGCGTCTCGCAGCAGATGTGGAAAAGGTGTTGCATGACCTTGATGCTCTTCCTGCAAGGGTGCTAAGTAGCACCACTGTGACAGTCAACGCAGAAGAAAATGGCAAAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTTAATGACAAGATGAATGGTGTTTGCTAG 1536 0.4661 MVLSKTASESDVSVHSTFASRYVRTSLPRHVFRIPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKEEGKPYDKPNIVTGANVQSFGSVCVKVCWEKFARYFEVELKEVKLRDGYYVMDPDKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFSIVSKDDGVPLVAFTLKDHTHFDEFQISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLAADVEKVLHDLDALPARVLSSTTVTVNAEENGKVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02196 511 Pfam Pyridoxal-dependent decarboxylase conserved domain 35 391 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lapu6g02196 511 FunFam Glutamate decarboxylase 68 370 - -
Lapu6g02196 511 Gene3D - 371 458 - -
Lapu6g02196 511 PANTHER GLUTAMATE DECARBOXYLASE 1 501 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu6g02196 511 Gene3D - 68 370 IPR015421 GO:0003824
Lapu6g02196 511 SUPERFAMILY PLP-dependent transferases 15 454 IPR015424 -
Lapu6g02196 511 NCBIfam glutamate decarboxylase 16 454 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu6g02196 511 FunFam Glutamate decarboxylase 371 458 - -
Lapu6g02196 511 Gene3D - 1 67 - -
Lapu6g02196 511 FunFam Glutamate decarboxylase 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02196 Lapu-Chr6 21472305 21479780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02196 1 511 Calmodulin-binding Proteins AT5G17330 81.589 0.0 871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02196 6 21472305 21479780 Lapu6g02196 6 21472305 21479780 ECH