Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01919 ATGGAAGAAATAGGTCCCAATTCATGCGCAAGGCCATCGTTAGAAAAGAAAGCAAGACCACAAGAGCAGGTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAATTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTCAGAAATGTCCCCGTTGGAGGTGGCTCCAGGAAGAACAAGAAGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAGGCCTCTCATCAGTCTCGGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAATCCATGACCTTAATTTGGCTTTTCCTGCAGCTATGGACAAGTATCATGGCATGTCTCCATATGTTGAGATGCCAAAACTTGAAATTGGTGGTGACAATACTAGTCACCACCATAGCCCTTCTTCTGCGCCAACTTCTCTTTCACCACCATATGGCATGGTGTCTAGGGGTTTGAATCCTTATGCTTCTAATTCCTTCATGACAAGCTCAGATTCACTTTACACAGCGAGCTATCCCATGCAAGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGGGTTTGGAAATAGATCACACGGGGTTCAAGAGAATGGTGGCGGCGGGAGGCTTTTGTTCCCTTTCGGAGACATCAAGCACCTTTCTGCAGGTGTTGATGTGGAACACAATAAAGAACAAGGAAATAATCCAACTGGATACTGGACTGGAATCATTGGTGAAGGCTCATCATGGTAA 774 0.4444 MEEIGPNSCARPSLEKKARPQEQVNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSSKVPDLNPPGLSSVSAISSQNPKMQGIHDLNLAFPAAMDKYHGMSPYVEMPKLEIGGDNTSHHHSPSSAPTSLSPPYGMVSRGLNPYASNSFMTSSDSLYTASYPMQEIKPNLSFSVDGFGNRSHGVQENGGGGRLLFPFGDIKHLSAGVDVEHNKEQGNNPTGYWTGIIGEGSSW* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01919 257 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Lapu6g01919 257 MobiDBLite consensus disorder prediction 65 91 - -
Lapu6g01919 257 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g01919 257 MobiDBLite consensus disorder prediction 75 91 - -
Lapu6g01919 257 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Lapu6g01919 257 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Lapu6g01919 257 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 144 IPR045174 GO:0003700|GO:0006355
Lapu6g01919 257 MobiDBLite consensus disorder prediction 141 156 - -
Lapu6g01919 257 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01919 Lapu-Chr6 19035322 19037272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01919 16 257 C2C2-Dof Transcription Factor Family AT3G61850 49.265 6.81e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g01919 zf-Dof 5.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01919 - - gmx:100775598 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01919 6 19035322 19037272 Lapu10g00258 10 4720138 4722575 PCT