Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01346 ATGGCTGAGGAATCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAGACTGAACAGTGCGGAAGTAAAGAAAGCAGAAAAAGGAAGGGAATACGAGAGCGATGAGAAGAGAACAGAGAAGATAATACCGTGTCCCAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTACTGGACTGCTGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGCCGTCGGAAGGGAAAGCCGCTCTGTCATGGTAGCGGCGAGTTCCCCGATGGGCTTGTCTATGAAAGTTCGGAAGATGAGAACAAGTTCGAGATGGAACAGAGGTTGGTTTCGAAAGAGGGTCACGCTGATTTTCGGCAAATCTTTCCGGCGGCCAAGCGGCGGAGGACTCCATCAGCTCAGCATGAAGGTCAATAA 465 0.4989 MAEESQGIKLFGAMIRLNSAEVKKAEKGREYESDEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPLCHGSGEFPDGLVYESSEDENKFEMEQRLVSKEGHADFRQIFPAAKRRRTPSAQHEGQ* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01346 154 PANTHER CYCLIC DOF FACTOR 2 24 100 IPR045174 GO:0003700|GO:0006355
Lapu6g01346 154 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Lapu6g01346 154 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Lapu6g01346 154 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01346 Lapu-Chr6 13219645 13221220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01346 2 144 C2C2-Dof Transcription Factor Family AT1G29160 49.701 3.71e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g01346 zf-Dof 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01346 - - gmx:100820604 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01346 6 13219645 13221220 Lapu6g01346 6 13219645 13221220 ECH