Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu6g01271 | ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGGAGAAGCTACAACAGCAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGAGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATAACAAACTCTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACTGCTGCCTCGCAACCCCAGATCGACACTGCTTCAACCTCCAATCACATCAACCCTTTGTTTTATGGGTTGCCGAGTAGCTCCAGCGATGTGAATCTTCCACTGTTCCCTAGGTTTGGTTCTAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTCGTGTCCAATGAAGCTAGTGAGAATAACAGTTTTAGAAACGGGTTTGGTTCAAATAACGCGCTTGTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTACTCCAGCTATGTCTTCACTGTTGAGCTCTACTTTGCTTCAACAGAAGTTCAGCAGTAGTGGCTTGAAAGATGGCGTTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAATCCCACTAGAGCAGTTGCAAATGACTAGTGATAACAGTGAGGCAGGGATGGTGGCTTTAAAAGACGTGAAAGTAGAATTAGGACCAAACAACAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGAATGTGGGCTTGTACGATCCTTCGCTATATTGGAATAATTCAGCAACAGCTATGGGTGTTTGGAACGACCAAGCTGCTAATATCGGTTCTTCAGTCACTTCTCTGATCTAG | 1068 | 0.4532 | MSGNCEKMVVIPPTTNQWPQVDDHKVLMGSFGGSNNSKVMEKPDQELVQEKLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITNSSSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEASENNSFRNGFGSNNALVSSYNSIFGSSSSSTSTTPAMSSLLSSTLLQQKFSSSGLKDGVDSNTFQHGLGLIPLEQLQMTSDNSEAGMVALKDVKVELGPNNRLEWNGACQNQIQNVGLYDPSLYWNNSATAMGVWNDQAANIGSSVTSLI* | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu6g01271 | 355 | ProSitePatterns | Zinc finger Dof-type signature. | 59 | 95 | IPR003851 | GO:0003677|GO:0006355 | |
Lapu6g01271 | 355 | Pfam | Dof domain, zinc finger | 55 | 111 | IPR003851 | GO:0003677|GO:0006355 | |
Lapu6g01271 | 355 | MobiDBLite | consensus disorder prediction | 115 | 143 | - | - | |
Lapu6g01271 | 355 | ProSiteProfiles | Zinc finger Dof-type profile. | 57 | 111 | IPR003851 | GO:0003677|GO:0006355 | |
Lapu6g01271 | 355 | MobiDBLite | consensus disorder prediction | 107 | 143 | - | - | |
Lapu6g01271 | 355 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 46 | 256 | IPR045174 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu6g01271 | Lapu-Chr6 | 12528913 | 12531093 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu6g01271 | 57 | 355 | C2C2-Dof Transcription Factor Family | AT1G28310 | 42.405 | 6.25e-48 | 163 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Lapu6g01271 | zf-Dof | 2.6e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu6g01271 | - | - | gmx:778098 | 513.072 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu6g01271 | 6 | 12528913 | 12531093 | Lapu6g01271 | 6 | 12528913 | 12531093 | ECH | |
Lapu3g03047 | 3 | 53667749 | 53670310 | Lapu6g01271 | 6 | 12528913 | 12531093 | PCT |