Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01236 ATGGGTTTGAGTTCCAAGCAAGTTTCTAATAGAGGGCTTGATTGGGACCAGACCTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCCACTCCTATGAGGAAACAACAGCAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCCAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGTGGTGGTAGGAAGAATAAGAGAGTCAAGAAATCAACCACAGCCACAGCTACAACCACCACCTCAAATGCCAACGTGGATGGTGAGTTGAGAACCCACATCACAATTCCTCCTCTTGCAGCGGATGATCACAAAACCACACCTTCCTCTCTCTACCAATCTTTGTGCCTGCCACAACAGAATCTGATGGGTACCAAAGTTTTAGAAGGCAAAGACTTTGGTATTGGCAATGGCATCTTTCTGAGTTCAACTGTGCCTTTTCCTCAAGACCAGAGTCTTCTCTTCCCTTTCACAACCTCAAACTCTTTTGACACAAACACGTGTGCAGTATCAAACTCTTTGCAATCCTCCAGTGTGTATAACCATGAAGAGTTTAAAATAATGGAGGAGCCAACCGTCAACAGTATAATGCCCAGCACTAGTGGTGGCACCAGCACACAGCCATGGGAGATAGCAGCAACAAGTTCAGGTTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATTGATTCGTTGGTCTCAACTGATCCAAATAATCCTTGGGATGATTCTGATATCAAACCCTGA 840 0.4548 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTATATTTTSNANVDGELRTHITIPPLAADDHKTTPSSLYQSLCLPQQNLMGTKVLEGKDFGIGNGIFLSSTVPFPQDQSLLFPFTTSNSFDTNTCAVSNSLQSSSVYNHEEFKIMEEPTVNSIMPSTSGGTSTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01236 279 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Lapu6g01236 279 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Lapu6g01236 279 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Lapu6g01236 279 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 206 IPR045174 GO:0003700|GO:0006355
Lapu6g01236 279 MobiDBLite consensus disorder prediction 26 47 - -
Lapu6g01236 279 MobiDBLite consensus disorder prediction 90 109 - -
Lapu6g01236 279 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01236 Lapu-Chr6 12194557 12196103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01236 29 135 C2C2-Dof Transcription Factor Family AT5G60200 50.000 5.03e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g01236 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01236 - - vra:106774613 497.278