Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01025 ATGGAAAGACAATTAAACTTATCATCTGCTATTTGCATGACCAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACGTTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAACTTAGCACCCTCTGTGGGATTGATGCATGTGCAATAGTTTATAGTCCTTATGATCCTCAACCTGAGGTTTGGCCATCCCCGATGGGGGTTCAAAGAGTGCTTGCCAAGTTCAGGAGAATGCCGGAATTGGAGCAAAGCAAAAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTTAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGATCAAAATTTGAAGGACATCAACAGGAGGATTGAGGTGTTGACTAAGAATCCTCAGAGTCAAACTCAAGTTGCAGCACCAGCGGTGACTGATGTTGTTGCCAGGATTGAAGACAAGGGACAAGGGAGTCATAATGGCCAGGGATTTGATATCAACATGGATCTCATGCAGAAGCAGAACTGGTTCATGAATTTGATGAACAATGGCGGTGGCGGGAATGAGACTATGCCTTTCGGAGATGTTAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCATTGA 747 0.4297 MERQLNLSSAICMTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNPQSQTQVAAPAVTDVVARIEDKGQGSHNGQGFDINMDLMQKQNWFMNLMNNGGGGNETMPFGDVNHQNGFWPNPFFH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01025 248 PANTHER MADS BOX PROTEIN 15 141 - -
Lapu6g01025 248 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lapu6g01025 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 63 IPR002100 GO:0003677|GO:0046983
Lapu6g01025 248 CDD MADS_SRF_like 14 97 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g01025 248 Gene3D - 25 131 IPR036879 GO:0003677|GO:0046983
Lapu6g01025 248 Coils Coil 103 126 - -
Lapu6g01025 248 FunFam agamous-like MADS-box protein AGL80 25 109 - -
Lapu6g01025 248 ProSiteProfiles MADS-box domain profile. 13 61 IPR002100 GO:0003677|GO:0046983
Lapu6g01025 248 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lapu6g01025 248 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lapu6g01025 248 SUPERFAMILY SRF-like 14 107 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01025 Lapu-Chr6 10311558 10312475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01025 13 168 Type I MADS-box Gene Family AT5G48670 68.590 6.47e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g01025 SRF-TF 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01025 - - gmx:100813231 427.172